RNA id: TU49922


Basic Information

Item Value
RNA id TU49922
length 889
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G40039
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9083660 ~ 9085793 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAAAAAATATTCtttattagcatttaaaaaacaactttgcaaTATATTAATCTTGACACTACACaattctcccccccccccccccccccccccccccccaccaaaaaaaaccaaaacattccCACAATCCATCCCAAAAGTGTCAtctatttttcattgtttctgtgaATTTGGTTCATGTCTGGCCTTTATGCCCAGGAGTTCTGTTCTTAGTTCTCCGGGTTTGGGAGGAGTTTCAGGAATtgaAGATCCGGTCTGTAGTATTGGTGTACAACTTCAGCTCCAGCAAACATGGCTATAATACTAGCTCCAAACATACTGAGGTACCGGGGCCAAGACACACCAGCTGGCATTTCCAGATAGGATGTATCACTGTTTTGGTGGTAattcttgtggttttctttccccctcAAACCATTGACATTGTGGTTCCACAGAACTCTACGGCCATTTCCGTACAGTGTGCCCCACTAAAGCGACCCCCACTGCACTTGCCAAAGTAACTTTAGTTCCGTTATCATATTGAAGTGTACTATTCTAGTATAACAAAAAGCTGTGGGGATTTGTCACGTCGAGAAACAGATGGGGACAAAAACacgtttatgtatttatcttctgCCCGGTGAACTTTACTTAATTAAGTCAGTAATCCTGATCATTGAAATACAGTTTATCTGATTAGATACACTCGTTATATGTTAAATCCTATTTACCAATAAAAATGAACGAATAAAGCcgctttcatttattttcatttctaaatgAGCTGTAAACAGCAACAGAACTATATTTGTTATCgtttaagaagaagaaaaaaatatatatcttccCAATGGTGTCTGTGTGGCCACTGAACAGAGCGGACTGCAGTGCCGAGACACGTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49886 lncRNA downstream 182179 8900113 ~ 8901481 (-) True G40008
TU49823 lncRNA downstream 416636 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 513771 8568052 ~ 8569889 (-) True G39929
TU49700 lncRNA downstream 814439 8268994 ~ 8269221 (-) True G39839
TU49559 lncRNA downstream 1187934 7891577 ~ 7895726 (-) False AMCG00012782
TU50011 lncRNA upstream 151107 9236900 ~ 9257451 (-) True G40115
TU50084 lncRNA upstream 601017 9686810 ~ 9690911 (-) True G40172
TU50119 lncRNA upstream 1139901 10225694 ~ 10225957 (-) True G40206
TU50194 lncRNA upstream 1463864 10549657 ~ 10551377 (-) True G40266
TU50257 lncRNA upstream 1642702 10728495 ~ 10728820 (-) True G40323
AMCG00012824 mRNA downstream 329 9077888 ~ 9083331 (-) True AMCG00012824
AMCG00012822 mRNA downstream 21335 9051577 ~ 9062325 (-) True AMCG00012822
AMCG00012825 mRNA downstream 52310 9013361 ~ 9031350 (-) True AMCG00012825
AMCG00012827 mRNA downstream 116048 8915063 ~ 8967612 (-) True AMCG00012827
AMCG00012823 mRNA downstream 175997 8906842 ~ 8907663 (-) True AMCG00012823
AMCG00012826 mRNA upstream 1225 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012829 mRNA upstream 27206 9112999 ~ 9152405 (-) True AMCG00012829
AMCG00012830 mRNA upstream 66763 9152556 ~ 9170975 (-) True AMCG00012830
AMCG00012831 mRNA upstream 85473 9171266 ~ 9250923 (-) True AMCG00012831
AMCG00012837 mRNA upstream 795043 9880836 ~ 9882770 (-) True AMCG00012837
TU49217 other downstream 2627482 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 6899497 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 7306439 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 8544069 523747 ~ 539591 (-) True AMCG00012628
TU49940 other upstream 26648 9112441 ~ 9113076 (-) False AMCG00012829
TU50581 other upstream 3154603 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 4029100 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 8794432 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 8868270 17954063 ~ 18043587 (-) False AMCG00013042

Expression Profile