RNA id: TU50084


Basic Information

Item Value
RNA id TU50084
length 4077
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G40172
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9686810 ~ 9690911 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gattataaacatgttttttttctgtttaataacattattattgtacaaATTTTATACAAAAATCGATTCAGGCTTGTCAAGTTCCACAAAAGTGTAATGTATTAAAGCACAATCAAGGGAGATTAAGAGTGGCCGGTTAGTTGCCTGCACATCGCAGTGAAGGGGCCCTCCAATTAAACACACATCAAGCAATCTCAAGAAAACAGTCCAGAAAAAGCATGACCCAGACAATCTGCACAAAGAGCATTGACAGCATTAAAAACACTTCCAATTACATCGCAATATCTGATCCTGAAGAGACAGCATCTGGATTAGGTGAGTATCAGAATGAAAATGCCTTCAATCTAGGTTATACTTTATATCTATTTTAACACCATTTCCCAAAAgctccatttcattttctgaaaactTTCACTAACTTTGTATTCATTACCATAGCtgcattttttccctttcttgtcATTCAAGTACATAGTAACAAATAGTAAAGACACACCATTTATGCAAATAGTTTGAGCTTTAATGATGTTTCCACTTTTCAAGGATTAGTTTCACTTGCATAATGATTTTTCCCCCCCCATAAATACCAACCTAAAAATCAAATGCTGTCTCTCAGGAAAACGGCAGTAGTGCTGATCGATAGTCAAAAACAAAGGCTTCAATATTCACTGTATTATACTTTTGCAAATTTAATACCTAAATAGGAGTATAAAGATTATATTCTCATTGTCTGTCACTGGTGTTAAGCCATGCAGCCAGGGCGTAATGTCATCAAAATATGCCTTTATGTTGGACCCGTGACTCCTccttacatttcattttctattttaggTTTCCATACACAGATCTCTGAAAAATCCTATGGCACATAATTGAGATACTTTAGAAAATATATGATGGTAGGATCACTTGATGATGACAGGATGACTTAttctataaatgtatgttttgctgGAACATCGCCTAAGGACAGCTAGTCAtaagtaataaagtaataaataactgaaaaaaaagtgATGGGTTGTCTGTCTGATGGTGATGGAATatcttataaaaataatttacttacTGAGAATTTTTAAGGTATTTCAGGGGAGACCTGGATCTCTGAAGTGCATGTAATGAAATCAAGTTTCAATTGCACCCCACATGCAACATTTTCCATTGTACTCAACTATTCCCTGAACTGAAacttttctgtaaatgttgAAGATTAATTTGCAGTATTGACTAGCAAGTTAGTCAGACACCATCATTGACAAATACCAATGAAAATGTTACCGAAAAAAGTCAACCGAAATGTTTATGAATGATACACTTTGAAAGTCACATGACAAAACTGTTTTCaggtttaaagttaaaaaaacagttgTTTCAAACTCGAAAGTACAATGTTAAGTACGGAAGTGCAAAATTCAAATGCATGTGATGGGGCAATCTTTTTAATTATGGACCATAAACTGTTTCTACTGATTAAAAGTCAGCTTATATTACACTTTTGCAATTCTGCGTCAAATCGTTACAAAGATATGCTAGAAAATGGCATTTAATGTCTTGGATTGTACACTAATTATGAATGGCATTCAAAATGCTCATATAATAGACCATAAACCAcaacaagtacattttaaaacaggaagGAGTTACTTGCTGGTTTGAGGTGGTATCTATGACAACATGAGCTGTCACTGAGGTTCAGACCAAATCgaaactttgacccatctgcCAGTCACAAATCATGTCAAATACCTGATGACTGTTTGACGGATACTTTCttctacatatttatatatgtaattggCTGGTGGGTCAAAGTGTTGATTTGGATTGGCCTGGCTATAAAAAGACTGCCCATTAAAATGTCTATGCATCCAAAACCTAAAGCGATGTTAGATAAttgtacatctttaaaaaaaaaaccaatctTATAAAACCCTTGTAGATGGAGTTTTGTCAATCACTTTGTGACATATttatgtgaatGTTAATGGATAAAACACTGGAGAATCATCTAGTGATTATATTGGTACGTAAGAAAAAGAGTAATTTCCTTTATGAATGGACGAGatcattcaaaattaaatagcGGCAGTCAAGTTAAAGTCTTTCAAGCTTTGCAAATGAAATAGAGTATGGGTCTATGGGTTGAACGCTAATCGAgtgtgagttttattttttgatttttagatttttgatttgattttcatCAGTGATTGCACATTCGAAATGCCAATAAACCAGTAAGCGAGATTTATGAACAACAGATAGAGACCGGTCACTCAAGATGAGAACATGTTGTGTGAACAGCAATGACACTTTAGGTGTGTTTAGTCTTAAAGAAAGGTATTTCATTCCTGTTGTAGTTTTGAACAGTACTTAAACTGGTGTTGATGTGCAACAAAATAATGCTTTTGTATGTTGTTGCTTTCTCTAGAAAATGTTgctctgtgttgtttgttttcattcctctttttcttattagtATCAACACACCTCTTATTTAAGCCcagcaaaatgtaatatttatatttgattggTGTCagaattgaaaaatattttcacaaatatgGTAAATTCACAATCTCTTCACTAATCACTGCAAACAAGCTGAGCCAATAGAAGAAGGGCTTGCACCTCCTCCTGAAAATGGAAGGTTTTACACATACAGTAGAATCTGCTTGCAAAGGTAGAATGTTGTCTCTCTTTGTGCACAGGAAATTATACAGCTACTTGCACAAAAGAAAGCAAGACATACACAAGATGTATGTACTCGTCACTTCTCAAATGTCATTTTCAACCTAGCAGTCCTTTTGCGAGAACAAGATTTACAATCAAAAcaagtgcaaataaaataaaaaaaactaaaaaagcagaatcatgcaaaaaaaaataaaacattgtagcccaaaaaataacaagaaagaaaatgaatatcaGAACAAGCATAGCATTATAAAAAGGTTTGGCTAACTCTCTATATGTAGGTTGTATTGCAAATAATTGACATATGCCAATGCAGCAGAAGAAGAGATGGATGTATCCCCTTTGGCATGATTAAACAAGACAGACCTTTTAGGATCTTTCATAGTTGtcactgatgtatttttttcttgtgatcTTATCTGAAATCTAAAACTCAAGAGTGAATACGATGTTTGAAATAGTCAATATCACTGGTTTAAATGCTTGATGAGGTGAGAAAAATGCCTATGACAGTCAGtcattttcatttctatttctttcaaacagaaatacatatttaattatctcTGGAAATGTGGGAGGTCAGTcagtgaaaatgtgaatgaaCTTCATATGGTTTGATTAgataattttcattaaaaaaaaaaacgcaagaCTTGATCCGGACAAATCATTAGCACCCGTAATATGTAAATGAGCAATACAACCAAGAGAATGTGGCGTCACCTCACTATTTAACACAGctttgcacattaaaaaaaagaataaaaatccTTCCGACTGCAGTGCACCGTAAAGCATGTTTTAACTCACACAGTGGCTCGATAGTGAGACATGCCAAAcccttcaaaataaacaatcaagCCAACACAAAATACTAAGAAACAATGGCTAGGGGCAACACTTCATGAATTTCAGTAGTCATGAATTTCAAATGTCTGGCAGTATAAGTTTTTGACAGAGAAGCTCACCGACAAACCACAACATTACATGGAGTTGCTTTTCCCCTCACGTTTCCAGGAAAGGGTCAGACAGTTCACAGCGCCGTCTTTTGTGGGAACATTCGGCTTCTGATGGTTCAATCTTCATTTTCGGGGATTTCATCAAGCTTCCCCAGACTGGGTTAGACCTAGACGTGGATAGAACCAGTCTTTTTGCTTCCTGGGTTGGGCGAAtttgagttttttcttttccccatcgatgtataattttcagaaacaaaatttGGCAGGatcttgaaatgtatgcagtattGGGCTCAGTTATTGTTTCTGAGGTCATGACGGGTAATGTTTTGATCCAGTTAGGAGCCAAAGTAGCACAAGCTGTATTCCTACCATGGGCCACAGTGACGGGCTCAAACCAGAGACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50011 lncRNA downstream 429359 9236900 ~ 9257451 (-) True G40115
TU49922 lncRNA downstream 601017 9083660 ~ 9085793 (-) True G40039
TU49886 lncRNA downstream 785329 8900113 ~ 8901481 (-) True G40008
TU49823 lncRNA downstream 1019786 8660448 ~ 8667024 (-) True G39952
TU49798 lncRNA downstream 1116921 8568052 ~ 8569889 (-) True G39929
TU50119 lncRNA upstream 534783 10225694 ~ 10225957 (-) True G40206
TU50194 lncRNA upstream 858746 10549657 ~ 10551377 (-) True G40266
TU50257 lncRNA upstream 1037584 10728495 ~ 10728820 (-) True G40323
TU50259 lncRNA upstream 1047071 10737982 ~ 10738597 (-) True G40325
TU50260 lncRNA upstream 1048174 10739085 ~ 10739378 (-) True G40326
AMCG00012831 mRNA downstream 435887 9171266 ~ 9250923 (-) True AMCG00012831
AMCG00012830 mRNA downstream 515835 9152556 ~ 9170975 (-) True AMCG00012830
AMCG00012829 mRNA downstream 534405 9112999 ~ 9152405 (-) True AMCG00012829
AMCG00012826 mRNA downstream 592880 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012824 mRNA downstream 603479 9077888 ~ 9083331 (-) True AMCG00012824
AMCG00012837 mRNA upstream 189925 9880836 ~ 9882770 (-) True AMCG00012837
AMCG00012840 mRNA upstream 732466 10423377 ~ 10436550 (-) True AMCG00012840
AMCG00012842 mRNA upstream 746410 10437321 ~ 10441546 (-) True AMCG00012842
AMCG00012841 mRNA upstream 753180 10444091 ~ 10489781 (-) True AMCG00012841
AMCG00012845 mRNA upstream 802451 10493362 ~ 10525888 (-) True AMCG00012845
TU49940 other downstream 573734 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 3230632 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 7502647 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 7909589 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 9147219 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 2549485 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 3423982 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 8189314 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 8263152 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 8485150 18176061 ~ 18191522 (-) True G41807

Expression Profile