RNA id: TU50119


Basic Information

Item Value
RNA id TU50119
length 264
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G40206
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10225694 ~ 10225957 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggccactctaccatacagtcctgattggtggagtgctgcatagatggttgttcttctggaaggttctcctctctccacagagacacgctggagctctgtcagagtgaccatcgggttcttggtcacctccctgactaaggcccttctcccccgatcgctcagtttggccgggcggccagctctaggaagagtcctggtggttccaaacttcttccatttacggataatggaggccactgtgctcattgggaccttcaatgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50084 lncRNA downstream 534783 9686810 ~ 9690911 (-) True G40172
TU50011 lncRNA downstream 968243 9236900 ~ 9257451 (-) True G40115
TU49922 lncRNA downstream 1139901 9083660 ~ 9085793 (-) True G40039
TU49886 lncRNA downstream 1324213 8900113 ~ 8901481 (-) True G40008
TU49823 lncRNA downstream 1558670 8660448 ~ 8667024 (-) True G39952
TU50194 lncRNA upstream 323700 10549657 ~ 10551377 (-) True G40266
TU50257 lncRNA upstream 502538 10728495 ~ 10728820 (-) True G40323
TU50259 lncRNA upstream 512025 10737982 ~ 10738597 (-) True G40325
TU50260 lncRNA upstream 513128 10739085 ~ 10739378 (-) True G40326
TU50261 lncRNA upstream 513938 10739895 ~ 10740301 (-) True G40327
AMCG00012837 mRNA downstream 342924 9880836 ~ 9882770 (-) True AMCG00012837
AMCG00012831 mRNA downstream 974771 9171266 ~ 9250923 (-) True AMCG00012831
AMCG00012830 mRNA downstream 1054719 9152556 ~ 9170975 (-) True AMCG00012830
AMCG00012829 mRNA downstream 1073289 9112999 ~ 9152405 (-) True AMCG00012829
AMCG00012826 mRNA downstream 1131764 9087018 ~ 9093930 (-) True AMCG00012826
AMCG00012840 mRNA upstream 197420 10423377 ~ 10436550 (-) True AMCG00012840
AMCG00012842 mRNA upstream 211364 10437321 ~ 10441546 (-) True AMCG00012842
AMCG00012841 mRNA upstream 218134 10444091 ~ 10489781 (-) True AMCG00012841
AMCG00012845 mRNA upstream 267405 10493362 ~ 10525888 (-) True AMCG00012845
AMCG00012847 mRNA upstream 326468 10552425 ~ 10556698 (-) True AMCG00012847
TU49940 other downstream 1112618 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 3769516 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8041531 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 8448473 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 9686103 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 2014439 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 2888936 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 7654268 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 7728106 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7950104 18176061 ~ 18191522 (-) True G41807

Expression Profile