RNA id: TU50140


Basic Information

Item Value
RNA id TU50140
length 771
RNA type TUCP
GC content 0.37
exon number 2
gene id G40224
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10436907 ~ 10444447 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccctttttaaaatattttattaaggaaattatacatgttaattttaatgaatgaatgataaTTCACAAATTATGTTATACAAGCACACAACCTTCACATAACTCATAACACATAAATACAGACAGTATAAATGATATCCAGttagttttgtatattttttttccattgacCATACTCCTCAGTTCTGAggaacacattaaaacaaactgaacaatgtttaaaatccGCTTTCAAAATACGTTCAATTTCTTAAACACATTGTTGTTCTTAAAAATAGTTGACTTCCTGGTGAatgattcaaataaaaaacaaagaacaaaggcCTTGGTGACTGTGTGTAATTCACAAGGCTTTATATAAAGGCACTCATTTCAACACATTGGTCTTTGTAGgatgttaataaataagtactgttcacaattttgcttttaaacCAAAAAGGTTGAGAGACTGTACAAAGTTATGTAGTGTCGTCAGGTAGTCTTCAGGGTGCTCCCTTAGATGGCCAGCATGAATGGACTCCTTCCAGCGCTTCTTCCCCACACTGATGCCCTGTGTCTGCCAGTGCCCAGTCAGTTTCTCTACCTCTTCACTGTCACTGAGTGGATCATTGTCACAGAAGAAGAACAGCGCTGGGGCTTTGACAGGTGTGTTCCAGAAGACATTGATGCTGTCATTGTAGTAATCGACAGTATACTTCTTGAAGACCCTAAAATACAGGAGACTGACTCCCTGGAACAGTCCCTGCAGTCGAGGGAAAAAAACCCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50128 lncRNA upstream 12536 10375031 ~ 10424371 (+) True G40214
TU50116 lncRNA upstream 264444 10172254 ~ 10172463 (+) True G40203
TU50050 lncRNA upstream 962687 9473973 ~ 9474220 (+) True G40146
TU50049 lncRNA upstream 963039 9473545 ~ 9473868 (+) True G40145
TU50017 lncRNA upstream 1142265 9294331 ~ 9294642 (+) True G40121
TU50179 lncRNA downstream 96281 10540728 ~ 10541960 (+) True AMCG00012848
TU50237 lncRNA downstream 295985 10740432 ~ 10743104 (+) True G40303
TU50386 lncRNA downstream 659378 11103825 ~ 11159087 (+) False G40436
TU50385 lncRNA downstream 712587 11157034 ~ 11159087 (+) True G40436
TU50467 lncRNA downstream 849770 11294217 ~ 11354359 (+) True G40496
AMCG00012839 mRNA upstream 26626 10409327 ~ 10410281 (+) True AMCG00012839
AMCG00012838 mRNA upstream 122657 9883124 ~ 10314250 (+) True AMCG00012838
AMCG00012836 mRNA upstream 666236 9751636 ~ 9770671 (+) True AMCG00012836
AMCG00012835 mRNA upstream 712977 9702270 ~ 9723930 (+) True AMCG00012835
AMCG00012834 mRNA upstream 745568 9634234 ~ 9691339 (+) True AMCG00012834
AMCG00012843 mRNA downstream 27418 10471865 ~ 10492477 (+) True AMCG00012843
AMCG00012844 mRNA downstream 87532 10531979 ~ 10534605 (+) True AMCG00012844
AMCG00012848 mRNA downstream 96835 10541282 ~ 10541470 (+) False AMCG00012848
AMCG00012850 mRNA downstream 102104 10546551 ~ 10550066 (+) True AMCG00012850
AMCG00012849 mRNA downstream 145751 10590198 ~ 10608349 (+) True AMCG00012849
TU49939 other upstream 1323806 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 2600693 7835346 ~ 7836214 (+) True G39709
TU49477 other upstream 2709079 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 3918986 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 4613587 5807846 ~ 5823320 (+) False AMCG00012718
TU50630 other downstream 2044128 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 2045352 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 3983866 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 4083715 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 4187910 14632357 ~ 14633413 (+) True G41059