RNA id: TU50194


Basic Information

Item Value
RNA id TU50194
length 1617
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G40266
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10549657 ~ 10551377 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCTAGTTTTACAGTCTTTTATTGAGAAACACACTGTGCATTTGCATTACAGAACTCAATTCAAAAAAACAGGATTAGTGTTAAAACAATCTGCTTTCAAAGCATATGGTATAACTTTTACATAGGCTTTCAATTTGTCTGCAGTACAGTTACTAGGCAAATGCATAAATCCATTGAAATGCACTGCACAGATGTATACACAAGACTTGTAAAAAGTTCAAACGCAAACTTTTGATCATTAGTAATggtggaaaacaatacaaaaatagattCAGTAATATTGCAGTGGCCCcttaaatacaatatactgGCTTACATATTACAGTCAGTAAAATCTGCGAATCTGAAGCACAGTAGCAGTCGGATGTATAGGTCTTGAAGCATGTGGAAACATcttagggaggccttcatccagcagtggattgagaGACTGATCTATAAACCACACTGTTCAATAAAACCAATATAAGGACCGACAAGATCTGTTGTGTGGATGCTGGGAATGtaatttcatacaaataaaaccatgtaCTCAAGATACACCACTGGGTGTCTGTAACATTACAAAAGTTTGATCAACACTAGAATTTTAAGGcaagaatgaaaatgtgtacaaaCCTAACATTTCAAATCTTCTGTTCCCTCAACGGACTCAAGTGTAAATGGATTCTATCCTCatcagattttcattttataaaaaaaaaacaacaactggtaAACAAACTGATTATACTTCAATgaaaattgcattacatttccattagaAATTCAAAGGAACAGAACCCTTATTTTCCCTTTACAGGTTTAAGTGAGTGTCCTGAAAGccaatttattttaaggaacCAGACAGCACATACAAAAAGCCATCCCAAACAATAAAACCATGCTCCATTTAGAAATGATCCACCCAGTTCAACATCCAGACAACTGCACTATACTATGTAACAAGACAGGGAAAAGAAACATTAACCTTCACCTTAAAAGTCCAGTGCATTAAATGACTGTTATAAGGGTTATATGCATAGACATTACCTTCAAGCCACTGCATgccaaatacacacattaaattCAGTCTCAAGTTAACTAATAGTTCATTGTACTAAATATGGTTTCAAATTagaaaaatttaaatcaaaaaataaaaatcaggaaGATGTTGTGCACATACAAAAAGATTACACCAAACTTAAATGCGGTCCTCAAATTACATTAACAGTCTTGGTGGACACAACGTGTTGGAACTGGAagccatgtaaaataaattattgtttatcTATTAAAGATTAAAAGGATTCCCTATCTAAACAGGATTAAAACTCGTCGTGTCGTACTAAAGCCTCCCCAAAATCTGTAGCTTGGCTCCCGACGAAGAGATCGTATTTGTCAACTATTTCTTCTTTGGTGAGTTTGCCgtcCTTGTCCGTGTCCGACTCGTACACAAGATGTTTCGCCTCTGCTTCTGCATGGTCGTAATCTGAAGGTAGAATCCAGTCTTTGGTCTCCTCTTTGTCCATTTTGccatctttatttttgtctctgaATTCTACAAACTGCTCCCTCTCAGTTTTTACCCATTCGGGCTCCTGTGGATCTCCATCATGACTGTACATATCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50119 lncRNA downstream 323700 10225694 ~ 10225957 (-) True G40206
TU50084 lncRNA downstream 858746 9686810 ~ 9690911 (-) True G40172
TU50011 lncRNA downstream 1292206 9236900 ~ 9257451 (-) True G40115
TU49922 lncRNA downstream 1463864 9083660 ~ 9085793 (-) True G40039
TU49886 lncRNA downstream 1648176 8900113 ~ 8901481 (-) True G40008
TU50257 lncRNA upstream 177118 10728495 ~ 10728820 (-) True G40323
TU50259 lncRNA upstream 186605 10737982 ~ 10738597 (-) True G40325
TU50260 lncRNA upstream 187708 10739085 ~ 10739378 (-) True G40326
TU50261 lncRNA upstream 188518 10739895 ~ 10740301 (-) True G40327
TU50262 lncRNA upstream 188977 10740354 ~ 10743231 (-) True AMCG00012858
AMCG00012845 mRNA downstream 23769 10493362 ~ 10525888 (-) True AMCG00012845
AMCG00012841 mRNA downstream 59876 10444091 ~ 10489781 (-) True AMCG00012841
AMCG00012842 mRNA downstream 108111 10437321 ~ 10441546 (-) True AMCG00012842
AMCG00012840 mRNA downstream 113107 10423377 ~ 10436550 (-) True AMCG00012840
AMCG00012837 mRNA downstream 666887 9880836 ~ 9882770 (-) True AMCG00012837
AMCG00012847 mRNA upstream 1048 10552425 ~ 10556698 (-) True AMCG00012847
AMCG00012846 mRNA upstream 16054 10567431 ~ 10574509 (-) True AMCG00012846
AMCG00012851 mRNA upstream 61232 10612609 ~ 10626275 (-) True AMCG00012851
AMCG00012854 mRNA upstream 78649 10630026 ~ 10630954 (-) True AMCG00012854
AMCG00012853 mRNA upstream 90341 10641718 ~ 10644387 (-) True AMCG00012853
TU49940 other downstream 1436581 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 4093479 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8365494 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 8772436 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 10010066 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 1689019 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 2563516 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 7328848 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 7402686 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7624684 18176061 ~ 18191522 (-) True G41807

Expression Profile