RNA id: TU50259


Basic Information

Item Value
RNA id TU50259
length 616
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G40325
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10737982 ~ 10738597 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTTCAGTTAAGCTTGAACGTAACATTTGCACCCCAGAGTAAATAATTATGGATATGGTTTCCACAAACCTTCCAGCTGTTTCCAAATGCAGCTTCTGACAGCACAATCTGGCCACTTCGAATCCTCATATCATCTTGGGGATAATTATTGAAATTTCCACAGATACCACACATAGTACCTTTATAAGTCCCAGGAACACTCACTTCTAGATGGGATTTCCCATTCCACAGTACCTGCAAAATGCCAACACATACATTGCTTCATTGCTTATAATTAGGATCCAAAAAGTGTGcaatacataaaacaactgAGAgtctgaaagtgtgtgtgtacagaggTAGAAAACAGCCTTTTCAGAAATtcatactaaaacaaaaaaattggtGTTTAACTATACTTCATATAGCAGTCAAccaagacaaaatacatttctggtgttttttaatgttattgggTTAATCAAAAATGATTTACAACTTACCTTTACTCCAATGTTTGTGTTCAGTAATATGGTGTTTGTCTTACGTTCCACATAAATGTAAGGCTCCTTTAGGAAAGGCAAAGTCACGGTCTGATAATCAACCTGGGAAGTAAAACATATGTTAGatcttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50257 lncRNA downstream 9162 10728495 ~ 10728820 (-) True G40323
TU50194 lncRNA downstream 186605 10549657 ~ 10551377 (-) True G40266
TU50119 lncRNA downstream 512025 10225694 ~ 10225957 (-) True G40206
TU50084 lncRNA downstream 1047071 9686810 ~ 9690911 (-) True G40172
TU50011 lncRNA downstream 1480531 9236900 ~ 9257451 (-) True G40115
TU50260 lncRNA upstream 488 10739085 ~ 10739378 (-) True G40326
TU50261 lncRNA upstream 1298 10739895 ~ 10740301 (-) True G40327
TU50262 lncRNA upstream 1757 10740354 ~ 10743231 (-) True AMCG00012858
TU50295 lncRNA upstream 119284 10857881 ~ 10862312 (-) True AMCG00012856
TU50578 lncRNA upstream 1498632 12237229 ~ 12239457 (-) True G40584
AMCG00012852 mRNA downstream 81849 10644390 ~ 10656133 (-) True AMCG00012852
AMCG00012853 mRNA downstream 93595 10641718 ~ 10644387 (-) True AMCG00012853
AMCG00012854 mRNA downstream 107028 10630026 ~ 10630954 (-) True AMCG00012854
AMCG00012851 mRNA downstream 111707 10612609 ~ 10626275 (-) True AMCG00012851
AMCG00012846 mRNA downstream 163473 10567431 ~ 10574509 (-) True AMCG00012846
AMCG00012858 mRNA upstream 3733 10742330 ~ 10753698 (-) False AMCG00012858
AMCG00012857 mRNA upstream 81662 10820259 ~ 10822853 (-) True AMCG00012857
AMCG00012856 mRNA upstream 121205 10859802 ~ 10862322 (-) False AMCG00012856
AMCG00012861 mRNA upstream 204243 10942840 ~ 10979099 (-) True AMCG00012861
AMCG00012867 mRNA upstream 269336 11007933 ~ 11030339 (-) True AMCG00012867
TU49940 other downstream 1624906 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 4281804 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 8553819 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 8960761 1776854 ~ 1777221 (-) True G38458
TU47757 other downstream 10198391 523747 ~ 539591 (-) True AMCG00012628
TU50581 other upstream 1501799 12240396 ~ 12253443 (-) True AMCG00012888
TU50830 other upstream 2376296 13114893 ~ 13115487 (-) True G40778
TU52042 other upstream 7141628 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 7215466 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 7437464 18176061 ~ 18191522 (-) True G41807

Expression Profile