RNA id: TU50385


Basic Information

Item Value
RNA id TU50385
length 2028
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G40436
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11103825 ~ 11159087 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caccaacacacacattcattgaaattaataatttatttggtttataaaAGGCATTGTGACTTACAATACTCGTGAACATTATATTCTTTACAGATAAACTTTAAAGATAAACTTCCACTGTAATATACACACCTGACTGATAAGAGCATTTGATCTTGGAGTCTTATGTTAAGCTATTTGGCTTTATAGCACTAGCTTTAATATTAGCatgattacaaaatgtaaaattaaatgagtagttatacaaaataagaaagcaCAGCAATCTGTTTTGTATTAGTCTACCAAGATAAACTGACTTTAACTCAGAGAAAAACTAGGCCAAAAAATAACTGTCCAATTTGGGAAGTCTTCCTACTCTTATAGCAAACTGGTGTGCAGTTtattcacattgaaatacaaaaataaaatggtacaaATATAAAGTCAAATCATTCCCCCTTGTTAATTTGCACAAAATAATACCCTTCTTCCCCATGTGGACCTGAGTACTAATAATGTGAGCTCTGCAGACATTGTACCTTGGGTGAACaataatttttaattgttaattgtatttatcaagTTAGTAGCcattacctttatttttttcatatatcCCCAACAGATGCAACAAGTATCATTCTGGCTTACAAGATGTTCTTGTTGAGATTTCATAGTTAGCTACTATAAACACCCATGCACTGCAAAATTGCCATGAATGTTTCATCAGGTGTCATTGCCACAGATCCAACTTAAAATAATGCTGcaatcaaaaaacaacacatactCGCAGCAAACCGGCAACCTAACGTAGGCATAACATTTCCTGGCCATGTTCACACCCTACAGACATTTTACTGATGCTTATTATCCGAGAGCTCAGTTTTGTACCAACCTGTGTTTgttatattcttattattcaaaCTCAGACTACTTGGTACTCTTTAAATGGCATAGCAGATCAGTTGCAGAACAAACATTACAGTTTAAAGGCTTGAGGAtctcagaaaaaaatgaaataataaaattatatatatatatatatatatatatatatatatatacacacacacacacaaacacacatatatcacAATGTAATATCCCTGTATTTGAATGGCTAGGTCCATATTAAAAACTCACATTTTAAGCATGGAGCCTAGAACATTCTGTTTGTGTAGACTCTGTTGGGCCCAATGGTAAGAAAAGATCggttataaaatgtatgttctgtAGGCCACTCATACTAGCAAAAGTATATCAATATTTGTATAGAAATaataccaaatacaaataaataaaattgctgtaaaaacaaaacaactaaaagcAAACACCCTGGTATTATTGTATTCTGCCGCACTCCCTTGTGTCTCTAATTAATTTAGACGGCATacattcagatttttaaatgctattccttaatttgagggtagtcaATGTGCTAGGTCTGTTGATACATGAATaccaaatattttgttttcccaatacagaacaaagaaaacaaaacacaccatGTTGTCCACCCACgtttcattcaaatgtatttgtaaaatcaaCACAGTAACAACAAAAAGATGTCCGAATCTGATCTATAGgaaatactaaatatattaaattatacatcagCATACAGTGGATTCAATATTTACAGTCTTTAACAGAAAACCTCTTCACACATCCATAACCAGCCCATGTCtccaaataatattaataagaacTCAAAGCTGCTCATTCCAGTATTGCACACATTAGCCGCACTTTCACTGACATCAACCACAGTGCCCATGTCAATGAAAATGCTACCTGCTTCAAAACAAGGGAACGAGAAGTTCTTGGTCACAAATGAAAGATTCAACCAAAAAAGGTCGCAATTAATTATCTTAGTGGGATTTGCTTATTGGTGCAAAACCTGGACATTGACAGCTGAGAGACACTTGGCCATGCTTCGGAACACAGGGGTAATAAACATGTCCACCACACTCCTCCAGACAAACTGAACAGAGGGCAGCGCCATCATACAGCTCTTCACTAATGGCATCACGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50237 lncRNA upstream 413930 10740432 ~ 10743104 (+) True G40303
TU50179 lncRNA upstream 615074 10540728 ~ 10541960 (+) True AMCG00012848
TU50128 lncRNA upstream 732663 10375031 ~ 10424371 (+) True G40214
TU50116 lncRNA upstream 984571 10172254 ~ 10172463 (+) True G40203
TU50050 lncRNA upstream 1682814 9473973 ~ 9474220 (+) True G40146
TU50467 lncRNA downstream 135130 11294217 ~ 11354359 (+) True G40496
TU50464 lncRNA downstream 165536 11324623 ~ 11354359 (+) False G40496
TU50466 lncRNA downstream 191186 11350273 ~ 11354359 (+) False G40496
TU50469 lncRNA downstream 245918 11405005 ~ 11405356 (+) True G40498
TU50468 lncRNA downstream 307134 11466221 ~ 11468218 (+) True G40497
AMCG00012864 mRNA upstream 150455 11000201 ~ 11006579 (+) True AMCG00012864
AMCG00012865 mRNA upstream 158722 10978883 ~ 10998312 (+) True AMCG00012865
AMCG00012863 mRNA upstream 209764 10913292 ~ 10947270 (+) True AMCG00012863
AMCG00012862 mRNA upstream 274409 10874552 ~ 10882625 (+) True AMCG00012862
AMCG00012866 mRNA upstream 294734 10825020 ~ 10862300 (+) True AMCG00012866
AMCG00012871 mRNA downstream 52935 11212022 ~ 11232862 (+) True AMCG00012871
AMCG00012870 mRNA downstream 84338 11243425 ~ 11248941 (+) True AMCG00012870
AMCG00012876 mRNA downstream 270879 11429966 ~ 11433519 (+) True AMCG00012876
AMCG00012884 mRNA downstream 473285 11632372 ~ 11770268 (+) True AMCG00012884
AMCG00012883 mRNA downstream 626851 11785938 ~ 11791546 (+) True AMCG00012883
TU50138 other upstream 712587 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 712587 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 712587 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 2043933 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 3320820 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 1329488 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 1330712 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 3269226 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 3369075 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 3473270 14632357 ~ 14633413 (+) True G41059

Expression Profile