RNA id: TU50468


Basic Information

Item Value
RNA id TU50468
length 1956
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G40497
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11466221 ~ 11468218 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taatgtagcACAATGGGCACATCAAGCCTTTTCAATTCAGTGTTCAGAGACTGGAGATTTTAAGAGCAGCACTTTGCAGAAATGACTGTTAAAActcaaaacacaaagtaaacagaaatagaaaaaacaaaacaaaaaactaaacagggCATCCCTTTATACagcattgttatttttccattgttgtAGGTCACCTGCCATTGAATATCACATgactttgtttatatatacacacaccttttcaaaatgaatcaCTGGCACtacaaaatgtgaagaaatcAAGGGTGTGTAGACATTCTATAggcactctgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatataaaaaaatataaagaatgaatGTAGCAAAGACATTTTATAGGATGATCTCCATCTTAAATGTAGTAACTCAGTAAATGTCTTTATGCAGACTTAGATAAGAAATATGACTTGTTTGCTTAGACCCATAAATAGAAGATATCAActactgtaataaaaataaaaataaatcccacattacacacacacacacagacaaaatgaGCCTCAGTATGATAAGGCTTTTCCATGCTTATACTTTCCTTTATATACCCCAAGCACCAAAACACCACTACTCAGCAGACGGGGATCACATTTCAGATGCAGTCTGGGATGGCACAGAAGAGCCCTGCGTGGCTTTATTGACCAGGATGTCACTGTGTTTTGAAACTAGCATGAGAATGTTGAATCAACAGCAGATCAGAAAACACTCATTCCCGTACAGGCAATAGAGCTGTATTGATTTCAAACAGCATTTCATTATGATGGATTCTTCTCTACAGTTGTGGGGAACTTGTACAGAATCTTTACTGCCCTGCCTCGCTTTCTGctaatgtgtttacatttagaacattcatttatttaaaaagtaaaaaataaaatattcaaccTTATTGAacttaaaatgtacacatcCCATTCCAAAAGAGATGGAGGAAAGTGTGTTTATTAGTTTACAATTTTAGGGTGGAGGGTCATTTATTAATGAGATAAAAATAATTGGATTTGaagatttgactttttatttattcatttattttgtatccctCATATATTTCAATTGAATTGGAGTTTGCAGAagtattgtatataataataataataataataataataataataatcatcatcatcatcatcatcattattgaGGTTGGATTTGCCCACAAATGATCCATGTTAAACTGTATGCTtcacagtaaagaaaaaaaaatggttacaTAGGAGAAGACATTTCCAGTATTGCTTTTCTCCTGGGTAAAGATTTACAAATTCTTTCCTTGGCAAGATTAATCTAAATGAGTCTTACATATTTTATTCTAGGCATAATCCATAttggagaggaggggggaaacAGAACAAATTAAGTGGCAGGTTAATAATTCAAACGCATGGGCTGatactgaaatgaaagcaatgcCCTTAAagcatttacagtttttctaGAGGCGCTTCAGGTGAGATGAGGTCAAATGAGAAATCTTTACTGTCATGGCAATAATGTTATGGGCTTCCCTCCGCTCACATGAAGTACTTATTAACAGATACACAGGAGTAGACTACTCCTAATATTACAATGGCAGCTGTTTACCCACACCTTTATTGTACAAGCATACTTTGTATGCTATGTATGCTTTGGGCAAGGGGGAGGTAAAGAAGAGATTACACAGTGGTAATTTTCTTGTCTTTAGTAGCCTGTTTGATGGCCGCCTGTTCGCAGATGATTTCCTTGAGACGCTGCAGGCGGGTGTTCTGCACAGTCTGGTCTCCCACCCCGGTCTGGCTGCGGTGTAGCAGGCTCAAGGCGTTGATGTACTCCAGCTCGGTGTATTTCACTCCTTGGTCCACCACCAGGTTGAGCAGCTCGTCAGCGGTGTTGTACAGCATCTCATAGTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50469 lncRNA upstream 60865 11405005 ~ 11405356 (+) True G40498
TU50467 lncRNA upstream 111862 11294217 ~ 11354359 (+) True G40496
TU50464 lncRNA upstream 111862 11324623 ~ 11354359 (+) False G40496
TU50466 lncRNA upstream 111862 11350273 ~ 11354359 (+) False G40496
TU50386 lncRNA upstream 307134 11103825 ~ 11159087 (+) False G40436
TU50542 lncRNA downstream 276378 11744596 ~ 11744795 (+) True G40555
TU50562 lncRNA downstream 726267 12194485 ~ 12194686 (+) True G40571
TU50602 lncRNA downstream 882632 12350850 ~ 12351728 (+) True G40604
TU50632 lncRNA downstream 988330 12456548 ~ 12457730 (+) False AMCG00012894
TU50641 lncRNA downstream 1023331 12491549 ~ 12500402 (+) False AMCG00012894
AMCG00012876 mRNA upstream 32702 11429966 ~ 11433519 (+) True AMCG00012876
AMCG00012870 mRNA upstream 217280 11243425 ~ 11248941 (+) True AMCG00012870
AMCG00012871 mRNA upstream 233359 11212022 ~ 11232862 (+) True AMCG00012871
AMCG00012864 mRNA upstream 459642 11000201 ~ 11006579 (+) True AMCG00012864
AMCG00012865 mRNA upstream 467909 10978883 ~ 10998312 (+) True AMCG00012865
AMCG00012884 mRNA downstream 164154 11632372 ~ 11770268 (+) True AMCG00012884
AMCG00012883 mRNA downstream 317720 11785938 ~ 11791546 (+) True AMCG00012883
AMCG00012887 mRNA downstream 495141 11963359 ~ 12008431 (+) True AMCG00012887
AMCG00012886 mRNA downstream 553248 12021466 ~ 12053113 (+) True AMCG00012886
AMCG00012885 mRNA downstream 767149 12235367 ~ 12242214 (+) True AMCG00012885
TU50138 other upstream 1021774 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 1021774 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 1021774 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 2353120 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 3630007 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 1020357 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 1021581 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 2960095 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 3059944 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 3164139 14632357 ~ 14633413 (+) True G41059

Expression Profile