RNA id: TU50469


Basic Information

Item Value
RNA id TU50469
length 352
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G40498
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11405005 ~ 11405356 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTTCTAGCTTATGAACTTATAAAATGGATAGCAAACTGACACTACAGACTTGTTTTGGAAAACCACAGCAGATTAATGACTTGTACCTTTCCATACATATttatgtgacatttattttacaaagttgTGAGTAAATTAGACTGGCCAAACCAAACCATAACACATTCTTCGACCTGAAGGACAGATTGTTTCTGCTGCAAGGTATGAAGTATTTGACTTTACAAAAAGTGTCGGGAAGACAGATTAAATAGTGTTACTTTGACTGAAAGGGCTCTAGGGTCTCTGGAGGTTCAGACATCACCTGCAAAACACATtgttgtaaaatgaaaaatataaaaaagagagGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50467 lncRNA upstream 50646 11294217 ~ 11354359 (+) True G40496
TU50464 lncRNA upstream 50646 11324623 ~ 11354359 (+) False G40496
TU50466 lncRNA upstream 50646 11350273 ~ 11354359 (+) False G40496
TU50386 lncRNA upstream 245918 11103825 ~ 11159087 (+) False G40436
TU50385 lncRNA upstream 245918 11157034 ~ 11159087 (+) True G40436
TU50468 lncRNA downstream 60865 11466221 ~ 11468218 (+) True G40497
TU50542 lncRNA downstream 339240 11744596 ~ 11744795 (+) True G40555
TU50562 lncRNA downstream 789129 12194485 ~ 12194686 (+) True G40571
TU50602 lncRNA downstream 945494 12350850 ~ 12351728 (+) True G40604
TU50632 lncRNA downstream 1051192 12456548 ~ 12457730 (+) False AMCG00012894
AMCG00012870 mRNA upstream 156064 11243425 ~ 11248941 (+) True AMCG00012870
AMCG00012871 mRNA upstream 172143 11212022 ~ 11232862 (+) True AMCG00012871
AMCG00012864 mRNA upstream 398426 11000201 ~ 11006579 (+) True AMCG00012864
AMCG00012865 mRNA upstream 406693 10978883 ~ 10998312 (+) True AMCG00012865
AMCG00012863 mRNA upstream 457735 10913292 ~ 10947270 (+) True AMCG00012863
AMCG00012876 mRNA downstream 24610 11429966 ~ 11433519 (+) True AMCG00012876
AMCG00012884 mRNA downstream 227016 11632372 ~ 11770268 (+) True AMCG00012884
AMCG00012883 mRNA downstream 380582 11785938 ~ 11791546 (+) True AMCG00012883
AMCG00012887 mRNA downstream 558003 11963359 ~ 12008431 (+) True AMCG00012887
AMCG00012886 mRNA downstream 616110 12021466 ~ 12053113 (+) True AMCG00012886
TU50138 other upstream 960558 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 960558 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 960558 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 2291904 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 3568791 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 1083219 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 1084443 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 3022957 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 3122806 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 3227001 14632357 ~ 14633413 (+) True G41059

Expression Profile