RNA id: TU50602


Basic Information

Item Value
RNA id TU50602
length 879
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G40604
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12350850 ~ 12351728 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCATTTGAAATCAGTGTTCTTGGCAATAGAATGGCAACTATGGGAAGGTCCAGTTACTGGTTTGTTAATATAAAGTGACCTGTGTATCAATGACTGGGGATTGCTTACTACTCTTTGTTAACCTGGGGATGATTATTGACATGCAAATCCTTTAAAGTGATagatacaaaaatgaatgaagcCCCTGTAGGGTAGAgatagtttaattatttttattatacgaagaagaaaataaaatattctaatttGTACCATTTTCACACAAATGCAGATGAAAGTACATGTTCTGtactttctgtttttcaggcCTTTGGTATTTGagtgttggatttttttttttttctctagttTTTACAAAGCTAGCTAAGTAACTAGCCATTGTGTGATGCAGTTGAGACTAATGTCCCTTATTTACTAAGCTATGACAATGCAACATGTATTAACCTATTTGTAAGCTGCTGTGCCTCTCCTTTTAGGATCTCGCTGCTCCTCCTTATCCAGTTTTACCCCATTTAAAGGATGACTGATTTCTTCTGGTGTTCAGAGTCCACAATGTTTCCTAGCACCATTTGAAATCGGTTATAATGACTGGGGATTCATCCATCTGATTCAAATCGTGGTTAGCAGTGAAGACTCGTAAATGTACTCTTTTATTCAAATGGTATGTGTGATTTGAATAGCATTGGCGATGTGCccattaagtttaattaaattgtttttgtaaatgtgagttttggatttatttaattgtttttcaagcATTACATGAACTGGGCTTCACACAAAAGTGTGTTGTATGCTTCATCTATTGCTCCAGCATATAATCACAAACACATTCACCTACATTTCACTGATTCCTTCCATTACAAATCTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50562 lncRNA upstream 156164 12194485 ~ 12194686 (+) True G40571
TU50542 lncRNA upstream 606055 11744596 ~ 11744795 (+) True G40555
TU50468 lncRNA upstream 882632 11466221 ~ 11468218 (+) True G40497
TU50469 lncRNA upstream 945494 11405005 ~ 11405356 (+) True G40498
TU50464 lncRNA upstream 996491 11324623 ~ 11354359 (+) False G40496
TU50632 lncRNA downstream 104820 12456548 ~ 12457730 (+) False AMCG00012894
TU50641 lncRNA downstream 139821 12491549 ~ 12500402 (+) False AMCG00012894
TU50655 lncRNA downstream 169735 12521463 ~ 12521819 (+) True G40643
TU50656 lncRNA downstream 169735 12521463 ~ 12521819 (+) False G40643
TU50742 lncRNA downstream 389446 12741174 ~ 12742694 (+) True G40710
AMCG00012885 mRNA upstream 108636 12235367 ~ 12242214 (+) True AMCG00012885
AMCG00012886 mRNA upstream 297737 12021466 ~ 12053113 (+) True AMCG00012886
AMCG00012887 mRNA upstream 342419 11963359 ~ 12008431 (+) True AMCG00012887
AMCG00012883 mRNA upstream 559304 11785938 ~ 11791546 (+) True AMCG00012883
AMCG00012884 mRNA upstream 580582 11632372 ~ 11770268 (+) True AMCG00012884
AMCG00012892 mRNA downstream 31330 12383058 ~ 12392105 (+) True AMCG00012892
AMCG00012894 mRNA downstream 101511 12453239 ~ 12497997 (+) True AMCG00012894
AMCG00012893 mRNA downstream 157256 12508984 ~ 12514898 (+) True AMCG00012893
AMCG00012895 mRNA downstream 166200 12517928 ~ 12553070 (+) True AMCG00012895
AMCG00012896 mRNA downstream 242157 12593885 ~ 12609201 (+) True AMCG00012896
TU50138 other upstream 1906403 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 1906403 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 1906403 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 3237749 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 4514636 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 136847 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 138071 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 2076585 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 2176434 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 2280629 14632357 ~ 14633413 (+) True G41059

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055432 True 98 miRNA 0.43 1 NC_007115.7 11606758 ~ 11606855 (-)
grasscarp (Ctenopharyngodon idella) TU130259 True 1406 lncRNA 0.35 2 CI01000020 5626020 ~ 5627625 (-)
tiger barb (Puntius tetrazona) TU130259 True 577 TUCP 0.36 3 NC_056710.1 13441943 ~ 13444915 (+)
mexican tetra (Astyanax mexicanus) TU94668 True 684 lncRNA 0.38 2 NC_035903.1 40706550 ~ 40709067 (-)