RNA id: TU50656


Basic Information

Item Value
RNA id TU50656
length 321
lncRNA type intronic
GC content 0.46
exon number 2
gene id G40643
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12521463 ~ 12521819 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCATGTAGTTCTGGgatgattcctcaccgttctcatgatcattgaaacttgCATGGAGTCctagaccgagggagactgacaattattttgtgtttcttccatttgcaaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacagagtgctcctaatctcagctcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50641 lncRNA upstream 21061 12491549 ~ 12500402 (+) False AMCG00012894
TU50632 lncRNA upstream 63733 12456548 ~ 12457730 (+) False AMCG00012894
TU50602 lncRNA upstream 169735 12350850 ~ 12351728 (+) True G40604
TU50562 lncRNA upstream 326777 12194485 ~ 12194686 (+) True G40571
TU50542 lncRNA upstream 776668 11744596 ~ 11744795 (+) True G40555
TU50742 lncRNA downstream 219355 12741174 ~ 12742694 (+) True G40710
TU50828 lncRNA downstream 593074 13114893 ~ 13115253 (+) True G40776
TU50829 lncRNA downstream 593493 13115312 ~ 13115532 (+) True G40777
TU50840 lncRNA downstream 738825 13260644 ~ 13261179 (+) True G40788
TU50893 lncRNA downstream 1361442 13883261 ~ 13885189 (+) True G40824
AMCG00012893 mRNA upstream 6565 12508984 ~ 12514898 (+) True AMCG00012893
AMCG00012894 mRNA upstream 23466 12453239 ~ 12497997 (+) True AMCG00012894
AMCG00012892 mRNA upstream 129358 12383058 ~ 12392105 (+) True AMCG00012892
AMCG00012885 mRNA upstream 279249 12235367 ~ 12242214 (+) True AMCG00012885
AMCG00012886 mRNA upstream 468350 12021466 ~ 12053113 (+) True AMCG00012886
AMCG00012896 mRNA downstream 72066 12593885 ~ 12609201 (+) True AMCG00012896
AMCG00012897 mRNA downstream 96948 12618767 ~ 12627577 (+) True AMCG00012897
AMCG00012900 mRNA downstream 318422 12840241 ~ 12867057 (+) True AMCG00012900
AMCG00012904 mRNA downstream 362670 12884489 ~ 12901327 (+) True AMCG00012904
AMCG00012905 mRNA downstream 384566 12906385 ~ 12916433 (+) True AMCG00012905
TU50637 other upstream 31041 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 2077016 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 2077016 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 2077016 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 3408362 9112460 ~ 9113101 (+) False AMCG00012820
TU51090 other downstream 1906494 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 2006343 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 2110538 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 2608976 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 2955360 15477179 ~ 15479366 (+) True G41264

Expression Profile