RNA id: TU50830


Basic Information

Item Value
RNA id TU50830
length 595
RNA type TUCP
GC content 0.42
exon number 1
gene id G40778
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13114893 ~ 13115487 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttaacagtgagagacagaataacaacaaaaaaatccagaaaaacgcatttcaaaaaagttataaattgatttgcatgttaatgagtgaaataagtatttgatcccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagggagtgctcctaatctcagctcgttaaaggtataaaagacacctatcaacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtcgaAGGaagtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcacaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacgctgaggaatcagcccagaactacacgggaggatcttgttatagatctcaaggcagctgggatcatagtcaccaagaaaacaattggtaacacacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50792 lncRNA downstream 203168 12907447 ~ 12911725 (-) True G40747
TU50794 lncRNA downstream 203168 12907447 ~ 12911725 (-) False G40747
TU50787 lncRNA downstream 215611 12896520 ~ 12899282 (-) False AMCG00012906
TU50788 lncRNA downstream 215611 12897254 ~ 12899282 (-) False AMCG00012906
TU50771 lncRNA downstream 372197 12741175 ~ 12742696 (-) True G40735
TU50850 lncRNA upstream 353818 13469305 ~ 13558179 (-) True G40798
TU50942 lncRNA upstream 768110 13883597 ~ 13885175 (-) True G40868
TU50934 lncRNA upstream 843317 13958804 ~ 13959820 (-) True G40860
TU50970 lncRNA upstream 869691 13985178 ~ 13986712 (-) True G40892
TU50982 lncRNA upstream 984459 14099946 ~ 14106270 (-) True G40903
AMCG00012906 mRNA downstream 208560 12897858 ~ 12906333 (-) True AMCG00012906
AMCG00012907 mRNA downstream 231527 12868899 ~ 12883366 (-) True AMCG00012907
AMCG00012902 mRNA downstream 301367 12806939 ~ 12813526 (-) True AMCG00012902
AMCG00012901 mRNA downstream 331716 12742908 ~ 12783177 (-) True AMCG00012901
AMCG00012899 mRNA downstream 445638 12651704 ~ 12669255 (-) True AMCG00012899
AMCG00012917 mRNA upstream 794184 13909671 ~ 13939577 (-) True AMCG00012917
AMCG00012919 mRNA upstream 857980 13973467 ~ 13975695 (-) True AMCG00012919
AMCG00012925 mRNA upstream 1004132 14119619 ~ 14143349 (-) True AMCG00012925
AMCG00012924 mRNA upstream 1059893 14175380 ~ 14180940 (-) True AMCG00012924
AMCG00012927 mRNA upstream 1070875 14186362 ~ 14190087 (-) True AMCG00012927
TU50581 other downstream 861450 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 4001817 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 6658715 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 10930730 2183885 ~ 2184163 (-) True G38490
TU47949 other downstream 11337672 1776854 ~ 1777221 (-) True G38458
TU52042 other upstream 4764738 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 4838576 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 5060574 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 5127263 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 5861573 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile