RNA id: TU51050


Basic Information

Item Value
RNA id TU51050
length 2284
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G40963
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14340946 ~ 14344481 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAGTCCCACATCAGCCAAATCCATTTTGGTAATCTTTTAAACAACTGAACTCGATTTACAGCCTTTGAAGATTTACGTTGCATTATTACTTAAACACCAAATGCACCAACACTGCTCAGGATATTCATATCTACAGAAACACAGAATTAGAGTTTGGGGTCAATTCAGCATTAAGAATCTTCGATGTGGAAGTGGGATTGTAATTAACCTTTGAAAAGGAATGGCTGTTTGTTAATTCCATACCACTTCAGTTCAATTCCACACATTCTTGTAGggattgatttaattgaacagGAAAAAGACTGATCTGCCAACAATTAGAGTGCCTGTATTCATGCTCAGCCCATCTCTTCTCCCCTTTTGTTTAATGAACACCAACCAACCTGGGACTCGCCAACCATTGCTTAACTTCAGATACCAAACTACAACAAACTGATCTGACGGTTAAGATTTTTATAAGGGGGGAAGCttctttagatttttaataaattttatCCAACTGCTCAATCAGAAACCTTTGCACTACCTTAGTTTTGTGGGTTTATTATAATAAGCAAATATTCTGTGAGAAACCACCAGCAAATGTTCTCTCTAATCCACACAGACAACCTCTGAGTGTTCACAAAACCTTTCGTTTCAGATAAAATAACACGTTCAGCGggtgaaaatgagaaaatatgtaCTCTACACAACAGCAAATTGTAGTTTCATGATTTTTGGCTACTGCCGACGGTATGAATCACGATTACTAGCATTGGAGTGGTTTCAGAAAATTTAATATTCTGTTTAATATTCAATCAGACAACATAATCCAGCTCTACATAAATCATCAAAAATAGATCTGCAAAAGGTGGAGAGTATAAGGAGAAGAGACTAAAGTCTTGTAAGTGAAGACAGAGCTTCATGGAAACGTGTATAGggcctaaaaataaacaaaaggctATTGCCCACCACCCACAGCAAAACACCATATCTATAAGCCCTTTAAGAAAAAGCCAAAGATCACCAACTTTATGAAAAGTGCAATATGCACAATTTTATTATGTCTGTGCTGTTGTTGAAGCACAAGGTTTAACTTAAAGATACAGtcgaataaaaaataaaagaaaaaggttcTCTTTGCAGGAATAGATATCCTGcacaattcaaaacaacaaaggcTCAAATCATGTTTACATGAGGTACAAAACGTCTAATGTAAAAAACAGggattttctttacaaaatgtcatgttttattctcTCATTTCTCcgtcttcttcctcttcttcaacACCTCtgatatataaaacattattgcaCCTGCAGAACAAGAACAATTCCGTTCATTATGCAACTGACACCagatttatgaaaatgttttaagaaaatacctagacatcatttaaaataaaggctaATGCAAGTAGGAACCCTAGGAATCTCTGTCCTAATGTTTTTGAATGATAAAATAAGTAGTATTTCACTGGATTTTGTTGTACACTGTCAGAagcaattaaacacacacacaaaatgaaaactgttaTACGATGATTAGAGGCTAAAATTTTTAAGCAGAATAAAACTATATCCTTACAATTACAAAAGTTTTGCTATGTGTACATTGTGAGTACAAGAGTTGTGCCCTGTAAGGAAGCACATAATAACCATGGGGGCATGTGACGGCAAACAATTGGGTCTTAATTCATAATCCTATTGCACACATCTATACATGCTTGAATTAAGCATCTGCTTACCGAACAAGGACTTCTCCTAAATGACCTGCCAGTGCTCCATCGACATACTCCTCAGTGTTAGCCAGCTTCGAAAAAAAACCGCAGTCAGTACATACAGGTCTTACCACTACAATCTACAAGGGCACTGCACATCtatttaaggatttttttcagttttttggggAATTAAGGAGATTTATCCCCGTTAAGTGGCTTTATTTTACTTCAGCTTTTTTAACCACTGGCAGCTATTAAAAGGACAAAACTCCAACCATGCAGTAATATTTCATAGTTACAATTCACACACAAGAACCAGCTACATACCTGCATGTTCATGTACCCATCAACCGACACCAGGTAGCCTTTGTACTCCATCCCCCACTTCAACTTCACCATGACTGGTTTACCAGTCAGGCCGTTCAGGAAGGGCTTTGGGTTCAAGGGTAAACTCATTGCGATGCTTAAAGTCTACGGGCTTTGTCGTGTTATAAACCTCGTAAACACCGCAAACCTCGCAGCAACGCGCCGACAACAGCAGGAAGTGCTTCCTTTCTTTGACCTCCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50999 lncRNA upstream 154810 14185240 ~ 14186136 (+) True G40920
TU50918 lncRNA upstream 352858 13986950 ~ 13988088 (+) True G40846
TU50893 lncRNA upstream 455757 13883261 ~ 13885189 (+) True G40824
TU50840 lncRNA upstream 1079767 13260644 ~ 13261179 (+) True G40788
TU50829 lncRNA upstream 1225414 13115312 ~ 13115532 (+) True G40777
TU51077 lncRNA downstream 51095 14395576 ~ 14395899 (+) True G40986
TU51080 lncRNA downstream 53116 14397597 ~ 14397855 (+) True G40989
TU51159 lncRNA downstream 280771 14625252 ~ 14625850 (+) True G41054
TU51165 lncRNA downstream 284102 14628583 ~ 14630610 (+) True G41058
TU51185 lncRNA downstream 330584 14675065 ~ 14677245 (+) True G41075
AMCG00012928 mRNA upstream 44 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012930 mRNA upstream 16073 14315841 ~ 14324873 (+) True AMCG00012930
AMCG00012929 mRNA upstream 27717 14299408 ~ 14313229 (+) True AMCG00012929
AMCG00012926 mRNA upstream 81783 14228638 ~ 14259163 (+) True AMCG00012926
AMCG00012922 mRNA upstream 165323 14163667 ~ 14175623 (+) True AMCG00012922
AMCG00012934 mRNA downstream 21617 14366098 ~ 14395069 (+) True AMCG00012934
AMCG00012935 mRNA downstream 61077 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012936 mRNA downstream 89322 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012939 mRNA downstream 134595 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012940 mRNA downstream 172302 14516783 ~ 14529773 (+) True AMCG00012940
TU50630 other upstream 1805017 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1850524 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3896499 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3896499 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3896499 10436907 ~ 10444447 (+) False G40224
TU51090 other downstream 83832 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 183681 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 287876 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 786314 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1132698 15477179 ~ 15479366 (+) True G41264

Expression Profile