RNA id: TU51053


Basic Information

Item Value
RNA id TU51053
length 315
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G40966
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14338914 ~ 14339228 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatatacaaataattgatatttatatataccaaTATGTGTTGAAATGTAACAAACTTTACTTCTAATGTACATGTTGACAATAACACTATGATCATTCCATGAACTCCTTTTAATAACTGAAAAGTCTGAAGATGAATAGGGCTACTTATCGCATGTTACACATACACTTTATCCTGTGTCGTCTTCACTGATTTGTGGATTTCATCCAGCTCTTCTTCTGTTTCTTGAAAGTTTTGTATGCAAGACAGATTTTTATCTTCCagctcttttaaaatgtttatcatCTGATTCGGATCTGTGAAATACATCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51020 lncRNA downstream 42138 14296574 ~ 14296776 (-) True G40941
TU50982 lncRNA downstream 232644 14099946 ~ 14106270 (-) True G40903
TU50970 lncRNA downstream 352202 13985178 ~ 13986712 (-) True G40892
TU50934 lncRNA downstream 379094 13958804 ~ 13959820 (-) True G40860
TU50942 lncRNA downstream 453739 13883597 ~ 13885175 (-) True G40868
TU51054 lncRNA upstream 120 14339348 ~ 14339810 (-) True G40967
TU51055 lncRNA upstream 1675 14340903 ~ 14344472 (-) False AMCG00012931
TU51133 lncRNA upstream 169329 14508557 ~ 14510685 (-) True G41030
TU51122 lncRNA upstream 188926 14528154 ~ 14529773 (-) True G41020
TU51152 lncRNA upstream 248617 14587845 ~ 14588126 (-) True G41047
AMCG00012932 mRNA downstream 7112 14326065 ~ 14331802 (-) True AMCG00012932
AMCG00012933 mRNA downstream 58193 14262518 ~ 14280721 (-) True AMCG00012933
AMCG00012927 mRNA downstream 148827 14186362 ~ 14190087 (-) True AMCG00012927
AMCG00012924 mRNA downstream 157974 14175380 ~ 14180940 (-) True AMCG00012924
AMCG00012925 mRNA downstream 195565 14119619 ~ 14143349 (-) True AMCG00012925
AMCG00012931 mRNA upstream 1188 14340416 ~ 14344432 (-) True AMCG00012931
AMCG00012938 mRNA upstream 85583 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012937 mRNA upstream 113187 14452415 ~ 14474581 (-) True AMCG00012937
AMCG00012944 mRNA upstream 335857 14675085 ~ 14702602 (-) True AMCG00012944
AMCG00012943 mRNA upstream 418573 14757801 ~ 14772607 (-) True AMCG00012943
TU50830 other downstream 1223427 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2085471 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5225838 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 7882736 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12154751 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 3540997 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 3614835 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3836833 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3903522 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 4637832 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile