RNA id: TU51054


Basic Information

Item Value
RNA id TU51054
length 463
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G40967
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14339348 ~ 14339810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctgggtttgttttttaatcatataaaaTTGCACCTCAGTCGCCGTTCCTTTTCCCTGTTGCGTTTGGCATAGTTCACTTTCTCTCTCGGCAGCGTATCCAAACACTCCAAGAGCTCCTCTATCCTGGTCTCTATGCTTGTCAGCATGTGCAGAGTGCTGATCTTCCCGTCCGCGTCTCCGATGCACGTCCGGTACACGGCCTCCACTCGTCTGTTTAACATTTTGAGCATGTGATCCTGAGAGAGGTGGAGATGTAGAACACATGGTATCACTGAAGCTCTCCTTCCCAGCCACAGCTGTAAGTGCACACCTCAGAACTGATGTGAAGCAATCCACCTGTTTCTCTTCATTAAATTCCCCAAAGGAAAACATCCTGGATTTCAGTTCCAGTTCAGATGCCTTCTCCTTTTCTCTCGCGATTGCAGCGTTAAGCATCTCTATCTGCTGCTCTAACATTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51053 lncRNA downstream 120 14338914 ~ 14339228 (-) True G40966
TU51020 lncRNA downstream 42572 14296574 ~ 14296776 (-) True G40941
TU50982 lncRNA downstream 233078 14099946 ~ 14106270 (-) True G40903
TU50970 lncRNA downstream 352636 13985178 ~ 13986712 (-) True G40892
TU50934 lncRNA downstream 379528 13958804 ~ 13959820 (-) True G40860
TU51055 lncRNA upstream 1093 14340903 ~ 14344472 (-) False AMCG00012931
TU51133 lncRNA upstream 168747 14508557 ~ 14510685 (-) True G41030
TU51122 lncRNA upstream 188344 14528154 ~ 14529773 (-) True G41020
TU51152 lncRNA upstream 248035 14587845 ~ 14588126 (-) True G41047
TU51203 lncRNA upstream 377424 14717234 ~ 14717564 (-) True G41088
AMCG00012932 mRNA downstream 7546 14326065 ~ 14331802 (-) True AMCG00012932
AMCG00012933 mRNA downstream 58627 14262518 ~ 14280721 (-) True AMCG00012933
AMCG00012927 mRNA downstream 149261 14186362 ~ 14190087 (-) True AMCG00012927
AMCG00012924 mRNA downstream 158408 14175380 ~ 14180940 (-) True AMCG00012924
AMCG00012925 mRNA downstream 195999 14119619 ~ 14143349 (-) True AMCG00012925
AMCG00012931 mRNA upstream 606 14340416 ~ 14344432 (-) True AMCG00012931
AMCG00012938 mRNA upstream 85001 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012937 mRNA upstream 112605 14452415 ~ 14474581 (-) True AMCG00012937
AMCG00012944 mRNA upstream 335275 14675085 ~ 14702602 (-) True AMCG00012944
AMCG00012943 mRNA upstream 417991 14757801 ~ 14772607 (-) True AMCG00012943
TU50830 other downstream 1223861 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2085905 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5226272 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 7883170 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12155185 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 3540415 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 3614253 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3836251 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3902940 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 4637250 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile