RNA id: TU51090



Basic Information


Item Value
RNA id TU51090
length 1068
RNA type TUCP
GC content 0.53
exon number 7
gene id G40999
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14428313 ~ 14433201 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGAAAGAGAAGAATGGAGTATAAGGCTCTTTAATAACCAACCTTGATTCCTGTATTAGTGGCATCTTTCACAGCTTCGAGCAGCTTATCGTACTTTGGATTGAACGTGACGGTAAAAGCACAATCGATGATGCGACCTTTATGTGAGTGCCGAAGTCTATCTTGCAAACATCATCGTACTGCAGGACTGTGAGGTCTCCAGCATTGGGTGTGTAGTGGGCAGCGCAGTTATTCAGAGAACAGCCGGTGGGAAAGGCCAGGCCCGCATGTAGACCGTTCTCTTTGATCAGCTTTCTGGAACAGTCTTCTAGCTTTTCACAGATCTCAATCATCGTCAGGCCCGGCTTGATCCAGCTCCTGACGTACTTCCTGACTTGTCTATGGGCCTCTGCGGCCTGCCTGAAGTCATTCCACACCTCCTCGTTGGCCTTGTCCAGCACTTTCTTCTCGTCGCTTGTCACCCGCCAGGCAGCACTCCGGCCATCTTGTGTGGTTGGATATTCACATTCCTGTCCTTTGGGGAATACTGCGCTTGGGTAGAGATCACCGATGGGAACAGACGGCGGATCTGTCTGCACCTTGGGgcccttcttcttctttttcttcttcttcttcttcccggCAGAgttttccccctcctctccatCTTCATCATCTTCCTCTTTGTCCTTTTCTTCCAGAGCTTGTTTCTCCAGTTGTTTGGTCACCCCATCCAACCCCTCAGCGCTTCCATCTTTTTCAGCTTCAGTACTAACGGGAGCGGCCgacttgttcttcttcttctttttcttcttcttcttggcgGTCTCTTCGGCAGCGTCGGCTTCCTCCTTGTCTTCGGGATCCAGCTCTCCGTTCAGGTGTTTCTCCTGCTCGGCTTCTCGCTCCGGCTCCTCTTGCAGTCGCACCACATCCGCCATGTTTGGAGACGCAGGGGCAGTGAGGGAGcgcaggggctgctgggaagCCGTGCCGTCCGGGGCAGAGCGTGCGGATCAGCTGAGGGGCGGGCGAGCTGTTTCTGCTTAGTGCGAGCAAGCTGGGGGGGTTTTTTACACCCAAAACTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51080 lncRNA upstream 30458 14397597 ~ 14397855 (+) True G40989
TU51077 lncRNA upstream 32414 14395576 ~ 14395899 (+) True G40986
TU51050 lncRNA upstream 83832 14340946 ~ 14344481 (+) True G40963
TU50999 lncRNA upstream 242177 14185240 ~ 14186136 (+) True G40920
TU50918 lncRNA upstream 440225 13986950 ~ 13988088 (+) True G40846
TU51159 lncRNA downstream 192051 14625252 ~ 14625850 (+) True G41054
TU51165 lncRNA downstream 195382 14628583 ~ 14630610 (+) True G41058
TU51185 lncRNA downstream 241864 14675065 ~ 14677245 (+) True G41075
TU51196 lncRNA downstream 256909 14690110 ~ 14690674 (+) True G41082
TU51199 lncRNA downstream 271759 14704960 ~ 14705185 (+) True G41084
AMCG00012935 mRNA upstream 9055 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012934 mRNA upstream 33244 14366098 ~ 14395069 (+) True AMCG00012934
AMCG00012928 mRNA upstream 87411 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012930 mRNA upstream 103440 14315841 ~ 14324873 (+) True AMCG00012930
AMCG00012929 mRNA upstream 115084 14299408 ~ 14313229 (+) True AMCG00012929
AMCG00012936 mRNA downstream 602 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012939 mRNA downstream 45875 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012940 mRNA downstream 83582 14516783 ~ 14529773 (+) True AMCG00012940
AMCG00012942 mRNA downstream 141392 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012941 mRNA downstream 219643 14652844 ~ 14681647 (+) True AMCG00012941
TU50630 other upstream 1892384 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1937891 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 3983866 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 3983866 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 3983866 10436907 ~ 10444447 (+) False G40224
TU51114 other downstream 94961 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 199156 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 697594 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 1043978 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 1187584 15620785 ~ 15630627 (+) False AMCG00012982

Expression Profile