RNA id: TU51133


Basic Information

Item Value
RNA id TU51133
length 2002
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G41030
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14508557 ~ 14510685 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttttttctttcatcgttgtccattttatttctgtcaccCTTACACCTTACAGTGACTCCAATAAGTGTACAAACAGCTGGTGTACAATTGACTGGAATTGCCTTGCAAGTACTTTGCTAGATATTGGGCCATCACAATCTTTGTAACAGGAGTGAAGGAAGTGCTTCAGTATCAAACATCACATTCAAACCATTCTCATCTCTAGTAGTTAAtctagtgaaaaaaaaaaaagtgaaataaataaattgtggtCCAAGTGACAAACTAGATCtatggagagaagaaaaacagttcaaaactataacaaaatgttttaagacAGCAAGTGTAAAGGAGACAGTATGATCTCAACCAAATACTTGTTCAGAGAGTTTTTATACATTGGTCTGTACAAACGCATGTAGTGATACATGAATGACACGGAATTAACCCACCCGCATGGATTGTCTTTCCAAAATTTCCATCTATACAGCATAGTGCAATCCATGATGGTCAAATTAGCAAGTGTAAATACAAGATGTAAACAGTcctatacaatttaaaaacaaaaaacaaagtataaatacattacagataATTACATCggctgggtttaaaaaaaaaaaaaaggaaattcaggTGCTGGTGTTGCTCAGAATAGCCCAATGAATGTAGAACACAAACTTATTCGACCAGACATCTTCAGCTTTCTCCCTTCAGGCGGCACACTTAAGAATAATttagtaacattaaaaaaaataaaaaagtctgcTTAGAGCTCTCTTAGATCAAGGAACATCCCATCCTTGTCAATGTCAAATTTCAAATACCCTGCAGTTAGGAatatcaaaaaaacaaatcatagtATGCCATTTTCCAAGgggtttaaaaacaatataatggtTATATACCATTATATTGAAGTGGAAACAAAACCACTGGCACTGCAGAGTATTACAGACAGGATCCGTATACCTGCAGATGCGATTCTCATAGGAAGTGGCGATGGCATTCCTACGAGTCAGAACTACAGAGGGCTACTGGATTAAGTGGTCTGCAAGGTATTCTTCCTTTTCCTGAGAGTGGGACATTACAACACATCCACCTGCATACTATCCACCTGACCAAGTCCACTTGGGTTAGTCCGCAGAGCACCTGACACTGAAGCAGCACTCATACGGTCAGCAAACTTCATGATCGTCTTTTTACACAACCATAAGCCACCTGGgcctacatttaaaatatgaaattagaTAAAGagttctaaaataaaacaaaaacagccatgAGTGCTGCTTACTTTGAATTATGTACATGTACACTATATCCTAAAGCACCAGGAAATGGCAAGTGCATTGTAGTCTAGGAAGAAGGCTTAAATAGGCTTAAAGGCACCAAGTGATTTCACTGCCAAGTGTCTCACAGCTAATACTGGGTATACATTGAATAGAGGACCTGGGGAAGCTATAAAAGAACAGCCTGCCTTTATGTTCCTCCACTGTCAGAACCCCACGGTTGTCACATGTCTGAATATGTACAAGAGGGGAGACATCACTAAAAATGACTTTTTGCGAGCCACCACGACCACAAACGCCTCCGTGTCTGTGCAGTGGTCATGAAGGCCGGTGTCCGTGCAGAGGAATGCTGTGCGCTGGTTTCGTCAGTCCTGTATGCGACCACAGCCTTACAGGACAGTGGCTTCTTGAAAAGCTTCCATCCACCTGTGGAAAccgcagaaaaacaaacaaaaccaaaatcaatatGTAACTATAGCATCACTGAAATGCCCATGGGTCTGGTACGTCATATGCTTACAACTTCACTTTTGCATCTTCACACATTTGTTGACATTTTACCCCCAAAGTTCTATATCCTGAATTAAATTTTCTAAGGTCACCGTTCAGTTCAAAATCTGCAGAGTATTGTACCTGATTCCCGAGCTACAGGTTGATTCTTAGCAGGATGCCCAGTTGATGCAAAGCAATAAACTAGGATATTGATGTGTGAGCAGTTTGCTTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51055 lncRNA downstream 164085 14340903 ~ 14344472 (-) False AMCG00012931
TU51054 lncRNA downstream 168747 14339348 ~ 14339810 (-) True G40967
TU51053 lncRNA downstream 169329 14338914 ~ 14339228 (-) True G40966
TU51020 lncRNA downstream 211781 14296574 ~ 14296776 (-) True G40941
TU50982 lncRNA downstream 402287 14099946 ~ 14106270 (-) True G40903
TU51122 lncRNA upstream 17469 14528154 ~ 14529773 (-) True G41020
TU51152 lncRNA upstream 77160 14587845 ~ 14588126 (-) True G41047
TU51203 lncRNA upstream 206549 14717234 ~ 14717564 (-) True G41088
TU51218 lncRNA upstream 223050 14733735 ~ 14736629 (-) True G41102
TU51268 lncRNA upstream 331558 14842243 ~ 14922316 (-) True G41138
AMCG00012937 mRNA downstream 33976 14452415 ~ 14474581 (-) True AMCG00012937
AMCG00012938 mRNA downstream 75401 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012931 mRNA downstream 164125 14340416 ~ 14344432 (-) True AMCG00012931
AMCG00012932 mRNA downstream 176755 14326065 ~ 14331802 (-) True AMCG00012932
AMCG00012933 mRNA downstream 227836 14262518 ~ 14280721 (-) True AMCG00012933
AMCG00012944 mRNA upstream 164400 14675085 ~ 14702602 (-) True AMCG00012944
AMCG00012943 mRNA upstream 247116 14757801 ~ 14772607 (-) True AMCG00012943
AMCG00012948 mRNA upstream 284357 14795042 ~ 14796838 (-) True AMCG00012948
AMCG00012955 mRNA upstream 541278 15051963 ~ 15065613 (-) True AMCG00012955
AMCG00012956 mRNA upstream 567413 15078098 ~ 15079375 (-) True AMCG00012956
TU50830 other downstream 1393070 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2255114 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5395481 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8052379 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12324394 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 3369540 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 3443378 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3665376 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3732065 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 4466375 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile