RNA id: TU51166



Basic Information


Item Value
RNA id TU51166
length 434
RNA type TUCP
GC content 0.47
exon number 3
gene id G41059
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14632357 ~ 14633413 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGCCTTCTTCAGACAGCAAGTCAGAGATTGTGCAgagattgttttctgttttgtattaaagTGGATTGTCTCCAGTGCTCCTGTGATGAGATGGACAGGACAGCAGCCGTTGGTATTGACTGTTTGATCACGACTCTGGCAGTAGAGCTCATGCTGTCCTCTGTGTTTCAGATTGTCATGGATCAGGATCTACAATTTGGCTGCCCTGACATCTTATACGAATCCTCTGGGGACAGAGCAATCTTTCCCAGAATGCTGTTAGACCCAGTGGATAAAACCTACATTTTTATGGCATCTGAGAATAAGctCAGCAGAATAAGAGTGGCAAACTGCTCCAAATTTGGGACACTGGCAGCCTGCTGGTCTGCACAGGACCCGTACTGTGGATGGTGCGCTCGTAGGAACAGATGCTCGTTTGAGGAGGAGTGTTCNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51165 lncRNA upstream 1747 14628583 ~ 14630610 (+) True G41058
TU51159 lncRNA upstream 6507 14625252 ~ 14625850 (+) True G41054
TU51080 lncRNA upstream 234502 14397597 ~ 14397855 (+) True G40989
TU51077 lncRNA upstream 236458 14395576 ~ 14395899 (+) True G40986
TU51050 lncRNA upstream 287876 14340946 ~ 14344481 (+) True G40963
TU51185 lncRNA downstream 41652 14675065 ~ 14677245 (+) True G41075
TU51196 lncRNA downstream 56697 14690110 ~ 14690674 (+) True G41082
TU51199 lncRNA downstream 71547 14704960 ~ 14705185 (+) True G41084
TU51207 lncRNA downstream 94769 14728182 ~ 14728449 (+) True G41092
TU51211 lncRNA downstream 102408 14735821 ~ 14736661 (+) True G41096
AMCG00012942 mRNA upstream 52129 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012940 mRNA upstream 102584 14516783 ~ 14529773 (+) True AMCG00012940
AMCG00012939 mRNA upstream 121868 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012936 mRNA upstream 181254 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012935 mRNA upstream 213099 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012941 mRNA downstream 19431 14652844 ~ 14681647 (+) True AMCG00012941
AMCG00012947 mRNA downstream 147152 14780565 ~ 14793388 (+) True AMCG00012947
AMCG00012946 mRNA downstream 164299 14797712 ~ 14811683 (+) True AMCG00012946
AMCG00012945 mRNA downstream 201077 14834490 ~ 14851076 (+) True AMCG00012945
AMCG00012949 mRNA downstream 245349 14878762 ~ 14922962 (+) True AMCG00012949
TU51114 other upstream 102551 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 199156 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 2096428 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 2141935 12489799 ~ 12490422 (+) False AMCG00012894
TU50139 other upstream 4187910 10436907 ~ 10444447 (+) False G40224
TU51320 other downstream 497382 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 843766 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 987372 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 4392148 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 6636262 21269675 ~ 21278728 (+) True G42326

Expression Profile