RNA id: TU51185



Basic Information


Item Value
RNA id TU51185
length 809
lncRNA type intronic
GC content 0.43
exon number 2
gene id G41075
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14675065 ~ 14677245 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTAACTCAGCAGTAATGTTTATTCAAACAGGAAGtacataatgtaataataaaaaataaaaaaacagcagaagcTCCAGCTACACCAACGTCCTGTATTACTGCTTAAGGCAGTCTGCTGTAATAGTGGTTTGTCTGAAGTTCCCCTCCTTCTTCTCTAAATTGAATGTCTGTCTGCTAGATCTTGAAACACATCCCCAACAGCTCCTGTCACTCGATGAGAAAACAGTTGCACGCCAAGATCATAGCCTTCAAGCAACTACCTGCTGTGGAGGtacaatcaataaatattcTGGTGTACATTTTCAGGAAGGCTTGACACATTTTCTTATTAGTTATTAATCTCCAATAAGCTACATTTCAGTGTGCCAAGCGATTATTGGCATAGTGCACCCTGATGTCAGAGATCAGCCGTCTCTGCTTCAAGCAAAAAGGATGAAGAGAGTATTTTCCCTCTTCTAGATTCTATAAACTACCATAACCCTCACTCTCATACATCACAACACCTTCCTCCAGGGTTAATGGTGTGAAGCGCTTCACCACAAAGCACATCCTGCCCCCGCGCCCCAGCTGAGCATTCCCAACCACATTAATCCGCTGCCAATGAGATGAACAGCGACCCAGAGAGGATTAATGGTCTCGGCAGAACAAATGGCTACAGAACTGCGGACTTCACAGCAGTCTTCTCAAAGACCCATGACCTCAGTGCGGTGCTAAACAGACATGAATGGGTTACACTGCAGCACATTTAATGTTGTGTCACATTTGTGCTTCAGGCTTTGCTATATTGACAGTGAGTGGAATGGTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51165 lncRNA upstream 44455 14628583 ~ 14630610 (+) True G41058
TU51159 lncRNA upstream 49215 14625252 ~ 14625850 (+) True G41054
TU51080 lncRNA upstream 277210 14397597 ~ 14397855 (+) True G40989
TU51077 lncRNA upstream 279166 14395576 ~ 14395899 (+) True G40986
TU51050 lncRNA upstream 330584 14340946 ~ 14344481 (+) True G40963
TU51196 lncRNA downstream 12865 14690110 ~ 14690674 (+) True G41082
TU51199 lncRNA downstream 27715 14704960 ~ 14705185 (+) True G41084
TU51207 lncRNA downstream 50937 14728182 ~ 14728449 (+) True G41092
TU51211 lncRNA downstream 58576 14735821 ~ 14736661 (+) True G41096
TU51290 lncRNA downstream 249080 14926325 ~ 14955039 (+) True G41158
AMCG00012942 mRNA upstream 94837 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012940 mRNA upstream 145292 14516783 ~ 14529773 (+) True AMCG00012940
AMCG00012939 mRNA upstream 164576 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012936 mRNA upstream 223962 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012935 mRNA upstream 255807 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012947 mRNA downstream 103320 14780565 ~ 14793388 (+) True AMCG00012947
AMCG00012946 mRNA downstream 120467 14797712 ~ 14811683 (+) True AMCG00012946
AMCG00012945 mRNA downstream 157245 14834490 ~ 14851076 (+) True AMCG00012945
AMCG00012949 mRNA downstream 201517 14878762 ~ 14922962 (+) True AMCG00012949
AMCG00012952 mRNA downstream 297465 14974710 ~ 14975822 (+) True AMCG00012952
TU51166 other upstream 41652 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 145259 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 241864 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 2139136 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 2184643 12489799 ~ 12490422 (+) False AMCG00012894
TU51320 other downstream 453550 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 799934 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 943540 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 4348316 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 6592430 21269675 ~ 21278728 (+) True G42326

Expression Profile