RNA id: TU51218


Basic Information

Item Value
RNA id TU51218
length 2895
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G41102
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14733735 ~ 14736629 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCACTGTAGCAGCTGTCCTACATTGAAAGCTCAGTGTGACGACACTGCTGTAGGTTGTTTCACAGTTTCACTGTGTGGTTGGTTGTTGGGCTGTTGCAGGATGAACATGCAGTAACAGATTTCACAGTGGCAAAGGTAGCTAGGCAGAGATACCTTATGAATCTGATATGGGGACTGTTATGTAATGGAGGATGAGGCTGTGCAATGGCTGCACCATTATTGTTCTTACTGCATTCTTATTAAGTTGCTGGAAATGTCAGTGTTGAATCCATATAGTGTCTTTTTTGCCATtctcaatattattttcctttttctgaagAACTGGGCTGGCTATTGTTCTGTCATTTGTTACTTGTGTTGTCTAGGGTAAAATGGGACATTAGCACTGCCTGCAACATGTTTCACTTAATGTGTTGTGGCGATAAAACTGTGAGGTTTTTGAGAGAAAACGAGAGGTCCAAGAACAAAGTCGCATGCGTCCCCCCACTGGCAGACCGCAGTTTTGGAGGTGCTCCTTGtgttgacaaaacaaaatcacacaacCAGCTAAATGCTGCAGCTACTCCACGCACCTGATGACATGGTTAACTGAGCTGCCCATGCTGACACATCAGTCAAAGCTGATGAAGTGTTCTTAAACAGTGCGCCCTGCATTAGACATTCAAGGCGGCTCAGACTGCACTGGCATTGTGTTACACTGTGTTTTAAGTGTCAAATAAATCACTCATTTAGTCATACACATTGTGTATGACAGGAAATGAAACTTGTAAGACATAATTTGTATTGATGTCAGATATTGGGAGCTGCTCTTTGGTGCTAAAATGCTCTAAAACCATTTCCATTGTATTGCATCTGTTAATCTGGTGcatatatgtttatgtgtgtgcgtgggtattgttttgttttaaacaatttaaactgaaagcTTGTCTTGTAGAATTGCTTGTGAGCTCATAAACTGGGTTGAAAAGTCTGGGCTTGTTGTGGCTTCTGTTGCTTAAAGCCAAACTCTCTGGAGTCTAGTTGTGTGCAGTGCAACACCGTGAGACCTGCAGGTATAGGTGGCAATCTGTAAGGTCTGTTCCACAGTCTGGGCCTCGCTCCACTGACTCTGAGCTGCTTTTTCAAGCTGTAAGTTCAGGCCGAGAGTCAGGCACAGAAAggctgtgttttaatgtaatccTCAATGTGCCATCTGCTGAAGACAAAGGCCAGGGCAGGTAAACAGACCAAATGTTTGCAGAGCAGCAATGTGCTATAAATCCATCCAGAGCACTAAAATCTCACATTGTCCTGCATGATGAAATAATGTTGCCCGGTGTCGAACCATTTGAACACCTCTCTTACATTcatcatttttctatttgtttttacatgaatgagataaaaaaaatctgccttttTACACCCATgagagtttaaaacaacaacaaaaagataattattttaagtacatATTTGGGGAAGGCTTTGCTTTTCACTGCTGTTCCCATTGTCgagtgcagtgcagtttggGATTGTTATAGTTTTGGCCTCATTTTACTGTAGATAGATGGCACAGCCCTGAGCTGTCTTACTCTTTGTGTGATAAACGGCTTTATTTCATCTGCCAGAGCACGATTATCCTCGGCTGACCTCTATACACACAGAATGAAGGGAAGACCAAGGCAGCTCGGCCCCCACTCCTGTTATTTATAATGTGTCAGAGTGTACTTCCTGCCCAACTGCAGCCCCTCAGCTGAACAACTGACCTTAGCCATTTGCTGAGTGCAAGGCCACATGCTGTTGGCCTGGGCATGACAACACTTGGCGGGTCAGCTTGCTTCCCATGCAAGTGGATTTTAACTCAAGGTCTCGCAGTGCTCCAGTcctgcacacactgcagcagGTGCATGGActggatacacacacatacttcagaaagagagagatttgtttttttatgtgatttaaGTTCtgtgagtttttctttttgtgggtgtgtctgtttttattgcattgtgaaaaaaaaattaaacacacaataactGGTATGATGTTTCATACATTTCCAAatctcagtgcagtgcagggtttatatatattatatacacacaaaccctgcactgcactgagatTTGGACTTCTTTAGCATCAGGATTATGTGTTGGTTATCTTTTTGCTGATGTGAACTTTAGGGTTGTTCATCTAATGGGAGAATATCAGGAAGCTGGCCTTGTTGCACAGCTGTCTTAAACTGAAATAAGCAGGATGCTGAGAAGCAGCCTTGGGTCCACTGGATAAGGAAAAGGTGTCTAATTAGACTTAAGAACTGGATTAAACCACAAGTGTGACCCACCTGACAATAGCAATCTACAGACCGGTTACATTTACAAGTAGTAGAAAGAAGCATCTGGCATAAAGCACTGAGGGCAGGGTAGGTACTTTTCTAATAGcttgtgggtcaaagttttgatgtcATCCCATCCTGAGTCTAATTTCAATACACACTGGAGCTGCTTGAGCCGGTTCTGAAACAGTGTTGAGCGAGGCAGCTGGGCAGTTTCACATGACACTGAACAACTGGATTTAAGGTGCTACTACAGGAAACTACAGTGTACACCAGGTAAGAGCTAGCATTGAAATGGTCTTGCCTTCAGCCCCTTTAAACCTACAGGCTATTTCTGGCCCAAGCTGGGCTGAAGTGCCAGTGTCAAAGGGTCTTAAGAGTCAggaatactgtatttataaatgcacaatatatatattttttaaaagggtcatgcttcacaaaaaataaaaagcttgcaATATTGGTttcttgattaattaattaacttagcGTTCCTTTCAAATTATATCAATAACCTTCTGCTAAAGTAAAATTTTGGCCTCCAAAACTGTATATTACCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51203 lncRNA downstream 16171 14717234 ~ 14717564 (-) True G41088
TU51152 lncRNA downstream 145609 14587845 ~ 14588126 (-) True G41047
TU51122 lncRNA downstream 203962 14528154 ~ 14529773 (-) True G41020
TU51133 lncRNA downstream 223050 14508557 ~ 14510685 (-) True G41030
TU51055 lncRNA downstream 389263 14340903 ~ 14344472 (-) False AMCG00012931
TU51268 lncRNA upstream 105614 14842243 ~ 14922316 (-) True G41138
TU51335 lncRNA upstream 338805 15075434 ~ 15077820 (-) True G41191
TU51378 lncRNA upstream 498991 15235620 ~ 15235862 (-) True G41224
TU51406 lncRNA upstream 500661 15237290 ~ 15278312 (-) True G41243
TU51558 lncRNA upstream 829880 15566509 ~ 15569851 (-) True G41369
AMCG00012944 mRNA downstream 31133 14675085 ~ 14702602 (-) True AMCG00012944
AMCG00012937 mRNA downstream 259154 14452415 ~ 14474581 (-) True AMCG00012937
AMCG00012938 mRNA downstream 300579 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012931 mRNA downstream 389303 14340416 ~ 14344432 (-) True AMCG00012931
AMCG00012932 mRNA downstream 401933 14326065 ~ 14331802 (-) True AMCG00012932
AMCG00012943 mRNA upstream 21172 14757801 ~ 14772607 (-) True AMCG00012943
AMCG00012948 mRNA upstream 58413 14795042 ~ 14796838 (-) True AMCG00012948
AMCG00012955 mRNA upstream 315334 15051963 ~ 15065613 (-) True AMCG00012955
AMCG00012956 mRNA upstream 341469 15078098 ~ 15079375 (-) True AMCG00012956
AMCG00012959 mRNA upstream 429321 15165950 ~ 15174248 (-) True AMCG00012959
TU50830 other downstream 1618248 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2480292 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5620659 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8277557 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12549572 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 3143596 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 3217434 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3439432 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3506121 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 4240431 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile