RNA id: TU51268


Basic Information

Item Value
RNA id TU51268
length 1333
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G41138
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14842243 ~ 14922316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacatgttttcattttttgtggcaAGTTAGCAGTTAAACCTTTATTATGTCTGCACATTCTTACCAAACAGTTGGTTAATATATCAAACAATTaggttttatcatttttaatacatacaaaaacactataaaatggcactctttaatactgttttgctGCAAAGTCTTTGTTTTAACATTCACATAACAAACACTGCTACAGTCTTGTCATCAGAAATTCTTCAGTCTGACCAATCACATTCCTCGGTGTTGGGTCAGGGCATGATAAGAAGTCACTGTCAGAACattcagtgtttcttttttgtgtgttgttttatattttaataaatcctTTAACAAACTGTCATACTTGTTGCTGAATCTGTAAATGTCActttacagtttcatttttatcCAGGTAAATTCCTTgtcatataaaaagaaaaatacatttcacaaaataaattaattccaaCAATATCCAGTATCCATTTAAACCTGACAGTGACCTCTGTGaaagtgacatttatttttttcaagaagATATTGGCCTGGATTAGTTTAATATGATATTCATATTCGAAAAGAAAACAAGGCATTCTGTATCTGTGTTAGCATTTTTTATCTGCCGTTTCTTTATCTCTGTGTTAATGAAGCTAGAGAAAGGATTCCCCTCCCTGCCCACTTCAGTGTAAAAAAACGTTTTTGAAATACAAGAATCGGCCAATATCAACTAAAAAagtttcactttaaaatatCCATACTACATGTTTTatctcaaaaataaacatataaaaatattaccAAAAGAGAGGGCTAGtgtgagggggagagaaagagggagagggagagagagagagagaggggggaaagAGCGACAACCAACCTTTAAGCCTAGTATGAGGTTGACCTTCCAAAAGAAATGCTCAGCAGATTCtgatttatgatttgttttttcattgtgcATATTGTAAAAGTGATCTCTACATTCATCTTCATCTACTGCAATAccttaatgctttttttaatagtatATGTTAACGTAAAGATTTGGCACATTGCTTAAAATGcaaattcctttaaaaaaatgttttgcttttttattagtGCATTTCGGGGTAGGTCCTTCCAGGTTGCATAGCGAGGGTTGTAGGTGCTGGTTAAGGTACGGTGACGTGGAAGGGGCTTCCTGGCACGTTTTCATCCCCCCATTTGACAATGAGGATGTAGTCCCCCTTTTCCTTGACTGTGTAGGTAACATTGTACATCCTGTTGCCCATGTGCTTCACGTACACTTCTTCGCAAGGCGTCTTTGGACCGTGCACTCCCACCATTAGCATGTTAGCTCTGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51218 lncRNA downstream 105614 14733735 ~ 14736629 (-) True G41102
TU51203 lncRNA downstream 124679 14717234 ~ 14717564 (-) True G41088
TU51152 lncRNA downstream 254117 14587845 ~ 14588126 (-) True G41047
TU51122 lncRNA downstream 312470 14528154 ~ 14529773 (-) True G41020
TU51133 lncRNA downstream 331558 14508557 ~ 14510685 (-) True G41030
TU51335 lncRNA upstream 153118 15075434 ~ 15077820 (-) True G41191
TU51378 lncRNA upstream 313304 15235620 ~ 15235862 (-) True G41224
TU51406 lncRNA upstream 314974 15237290 ~ 15278312 (-) True G41243
TU51558 lncRNA upstream 644193 15566509 ~ 15569851 (-) True G41369
TU51575 lncRNA upstream 716563 15638879 ~ 15639990 (-) True G41386
AMCG00012948 mRNA downstream 45405 14795042 ~ 14796838 (-) True AMCG00012948
AMCG00012943 mRNA downstream 69636 14757801 ~ 14772607 (-) True AMCG00012943
AMCG00012944 mRNA downstream 139641 14675085 ~ 14702602 (-) True AMCG00012944
AMCG00012937 mRNA downstream 367662 14452415 ~ 14474581 (-) True AMCG00012937
AMCG00012938 mRNA downstream 409087 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012955 mRNA upstream 129647 15051963 ~ 15065613 (-) True AMCG00012955
AMCG00012956 mRNA upstream 155782 15078098 ~ 15079375 (-) True AMCG00012956
AMCG00012959 mRNA upstream 243634 15165950 ~ 15174248 (-) True AMCG00012959
AMCG00012958 mRNA upstream 253972 15176288 ~ 15212332 (-) True AMCG00012958
AMCG00012964 mRNA upstream 297017 15219333 ~ 15233107 (-) True AMCG00012964
TU50830 other downstream 1726756 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2588800 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5729167 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8386065 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12658080 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2957909 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 3031747 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3253745 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3320434 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 4054744 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile