RNA id: TU51379


Basic Information

Item Value
RNA id TU51379
length 1888
lncRNA type read_through
GC content 0.41
exon number 7
gene id G41225
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15237287 ~ 15285288 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGAAAGTGGCTGTGCCAAAAGTCCATATCCACAGTCTCATCTTGGATTTTTCAGCTACGTCCTTTCTTGATGTCGTGTCTGTGAAGTCCTTAAAGCtgGTCATTAAAGAGTTCATGAGAATAAGTGTGAATGTCTACATCGCTGGATATGATGAGGGACATTCTGTTCCTGACTGTGCACGACGCCGTCCTCTTCATTAAGCTGCAGATCATCAACGGCACCATTCAGGATCCCATATATGACatgATTGAATTGATGCAGACATCCAGAGATCCCATACTCTTAACTGACGATGAAGAAGTTGAGACTTATGACAATCAACACAGGGCTATCCATGGACTGTCTCACTGAGCGTGGACATCAGGATGGGTGGCAGGATGCCATCTTTTCTTACAATCTttgatttaaagtaaaataaatattcaaaatgaagGGTTTCTATATAGTTTTCATGCTTGCTCCTCCAGTTAGGTAGAAGTTCCGGAACTGCAGGGTGACTGAACTGCCATTGTGATTAGATGGCATGAGGTTTGTTTTACACAGTCTCGGGGGGGGGGCGATTTAACACTGGCTTTCCTTGCTTTGGTGTTTAAGCAAAGTCTATCAATTATCTATTGAATCTCTGTCCTTTTCCATGGAGAATTCAAAAGTTTGGCAACACTTTACCTTAAATGGGCAACGATTCTTCATgatgagttctgatgttgaacACATGTATCATCCCTGACCCCAAACCTAGtctgtaaccctgaccctaaccttgttatacttgtgattaacagcagaactcacaTTAAGTgcataatgtattcatgtgttattcctgggGGATTCATACATCAATTCCTTGAGAACTGGAGCCCACTATTGTCAGATATGACAACAAGTTTAAGCCTATTGTTTCTAATTTGAATGAGATTCTACCTCTTGCTGAAAGGTACTGATGTATAAGTGTGAACAGTGTAGACTGACAGTAGCTATATCTGGTCTGTATATCAACTGCTTGGAAAAGGACTGATGTAGCAAAAGAAAcccaagtgtttttttattttaacactttattttaagtgtttttttgtatgcagCCCTCTACAAAATCTGAAGGAATTTCTGTCTATGTGGCCTGTTTGCATATAcgacattttattttcagttgtagACGCCTGTTCATTGGTGCCACAACAGGGCCAGTTTGGGGAATAAACACTGTGTTTCCTTCCCATCATGCCTTCCTGTTATAGAGGCATCCAACTCGGCCTGCCCTCACAGTGAGACCACTGTGGTCCTCAGGTGGCGTCATGATATCTGTGACACAGGAAGACTCCAGGGGATGGGAAGCCAAGTGTTTACACTCATTCTTACACTATTGTGGCAGTGATAAATGGACTTTAAGCAAGGACAGCTAAATATGGAGCCTGTAAAACACAAAGGTGTTGATTGAAAAATGACACAGGACTCATGAGAATGTTATGCAAATGAAAGGTAAGATCCTTTTCTAGTTTTTTGCATTACTAACAGAAAGTAAAGTGGAGAGACTTGCTGAGTGGTGAACGGTTGATCCTAATGCAAACGAGACAAAACCTTTCAAAAGTATGCAAATTCCCAGATGAACTGATTGATATGGGTCTATGAAAAGGAAGTATTGGGCAAACAAACTGTCAACCAGACTCTGCTAAACATCACATCCTGGCGTGGCCTCACAGTGCCGAAGACACCTTTAAGGTTTTCTAAGGAAAGCAAATTGCACTGAGAAGCCAAGACCCACATATCCTCTGTCTCCATGAGGGAGCAGTGCTGTCTACTGCCTGTAGTATTGATGTCTTTATGTAGGGgcacattaaatgcattaaatgctTTGAAGATTAAGCAAAAAATCTTCttcaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51327 lncRNA upstream 94399 15160436 ~ 15166469 (+) True G41184
TU51290 lncRNA upstream 305829 14926325 ~ 14955039 (+) True G41158
TU51211 lncRNA upstream 524207 14735821 ~ 14736661 (+) True G41096
TU51207 lncRNA upstream 532419 14728182 ~ 14728449 (+) True G41092
TU51199 lncRNA upstream 555683 14704960 ~ 14705185 (+) True G41084
TU51390 lncRNA downstream 53 15285341 ~ 15287816 (+) True G41230
TU51392 lncRNA downstream 15900 15301188 ~ 15301561 (+) False AMCG00012961
TU51438 lncRNA downstream 191891 15477179 ~ 15818342 (+) False G41264
TU51439 lncRNA downstream 195403 15480691 ~ 15483321 (+) True G41265
TU51457 lncRNA downstream 270858 15556146 ~ 15559305 (+) True G41282
AMCG00012957 mRNA upstream 36355 15212988 ~ 15224513 (+) True AMCG00012957
AMCG00012953 mRNA upstream 109045 15145480 ~ 15151823 (+) True AMCG00012953
AMCG00012954 mRNA upstream 125691 15081419 ~ 15135177 (+) True AMCG00012954
AMCG00012950 mRNA upstream 183990 15067090 ~ 15076878 (+) True AMCG00012950
AMCG00012951 mRNA upstream 212023 15043019 ~ 15048845 (+) True AMCG00012951
AMCG00012961 mRNA downstream 12674 15297962 ~ 15317344 (+) True AMCG00012961
AMCG00012963 mRNA downstream 135555 15420843 ~ 15475870 (+) True AMCG00012963
AMCG00012972 mRNA downstream 240746 15526034 ~ 15531609 (+) True AMCG00012972
AMCG00012974 mRNA downstream 260347 15545635 ~ 15554052 (+) True AMCG00012974
AMCG00012973 mRNA downstream 281205 15566493 ~ 15569943 (+) True AMCG00012973
TU51320 other upstream 124139 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 627455 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 731062 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 827667 14428313 ~ 14433201 (+) True G40999
TU50637 other upstream 2770446 12489799 ~ 12490422 (+) False AMCG00012894
TU51437 other downstream 191891 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 335497 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 3740273 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5984387 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 6085555 21370843 ~ 21418787 (+) True AMCG00013126

Expression Profile