RNA id: TU51390


Basic Information

Item Value
RNA id TU51390
length 1341
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G41230
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15285341 ~ 15287816 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAATCTGTCCTGGCACTTATTCATTATTGGTTAAGAATTTGAACTGGGATTGTAATGTCCATCTTTCCCCAAAAGATGCAGGTATAGGTTTTAATGGAAACTGAGGCCTGGAACAAAACAacactttgacctacccacacATCACAAACCTGTATTCAATTGGGTTGTGTTtgattgtcagaagccactttctatttcttataaataaataggaaacaAGTTTGTGCTTTGCCATTTGCTGGTAGGacaaaggtttgatttggtttaggcTTTTATCATACTCTCAATTTCACAAAGGCTGCATGGGCACTGACTAGTGACAGACAGAGGTGCAGAGAGACACATGATATTAATCAGTGATTAAAGATTCTCCAAAGAGGCTTCTCCATACTGTACACACAGCTTGTATCTAAGTAATACATgtcttgtttttgaaagttaAGCTCTTAAaagtattgtttaataaatgaccaaattaaaactgaagaaatatgtattaataataaatatgtgaaATGATACTTCTAATCTTATTTGCACATGTAATTGTAAACACTTGTGAGAACTGCATTTCAGAACAGTGTTTTACTTTGGTTATTCAAACATGTATAGTTTGAATTGTATTCTCTGTATTCTTCTGCTGTTTCTTGTAttctcatttaatttactgctcaatatatgcataaatataatattatttcaaactgTGTTGACTGCTTTGATTCTGAAGACCACAAAAGGCACCTAGATATGTATCTAGGTCTACAGTAAAACCCTGTGGGATGTggagcaaaacaaattatttgtttattattctcAGTTCCATATTTTGTTCAtacatttgctttgaatgcatcTCTTCACCTATAGTGTAGGTAGAGAAGCACATTTCATGGTAGAAGGCCCTGTAGTGATTTGTTTACACCAGTGTGGATATTTCACACAACTGCACTGGACTCTTTACAGGGTAGTGGACACTGGCTATATTCAACCATGTTAGAGCTGCCCAACTCCATACTCATAGGCCTAAAACTTTGTTTCCTTGCACAGTGACGTCCTTGACCATCctgtgtcttttttgtttgttttgtttttatttgtttcttttggtttgGCCATCGTGCTGGTTTATTTTGTCTATTGAATAAGTGTTTGTCACCTGTGGTCTCTGAGACTCCGTTTCTGGCCACCCCACCATaggttcccaaagtgtggccTGGGGGCCGAAAGCGTCCCTCAAGAatgtttggtgtggccccccaaagccaaccttcaccCCTTTCTGAaccttttctatatttttagtttctgaacactgttacaaattgcacatgtaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51381 lncRNA upstream 53 15237287 ~ 15285288 (+) False G41225
TU51379 lncRNA upstream 53 15260868 ~ 15285288 (+) True G41225
TU51380 lncRNA upstream 1373 15237287 ~ 15283968 (+) False G41225
TU51384 lncRNA upstream 20768 15248378 ~ 15264573 (+) True G41226
TU51327 lncRNA upstream 118872 15160436 ~ 15166469 (+) True G41184
TU51392 lncRNA downstream 13372 15301188 ~ 15301561 (+) False AMCG00012961
TU51438 lncRNA downstream 189363 15477179 ~ 15818342 (+) False G41264
TU51439 lncRNA downstream 192875 15480691 ~ 15483321 (+) True G41265
TU51457 lncRNA downstream 268330 15556146 ~ 15559305 (+) True G41282
TU51458 lncRNA downstream 278689 15566505 ~ 15569834 (+) False AMCG00012973
AMCG00012960 mRNA upstream 6094 15274952 ~ 15279247 (+) True AMCG00012960
AMCG00012962 mRNA upstream 24416 15260248 ~ 15260925 (+) True AMCG00012962
AMCG00012957 mRNA upstream 60828 15212988 ~ 15224513 (+) True AMCG00012957
AMCG00012953 mRNA upstream 133518 15145480 ~ 15151823 (+) True AMCG00012953
AMCG00012954 mRNA upstream 150164 15081419 ~ 15135177 (+) True AMCG00012954
AMCG00012961 mRNA downstream 10146 15297962 ~ 15317344 (+) True AMCG00012961
AMCG00012963 mRNA downstream 133027 15420843 ~ 15475870 (+) True AMCG00012963
AMCG00012972 mRNA downstream 238218 15526034 ~ 15531609 (+) True AMCG00012972
AMCG00012974 mRNA downstream 257819 15545635 ~ 15554052 (+) True AMCG00012974
AMCG00012973 mRNA downstream 278677 15566493 ~ 15569943 (+) True AMCG00012973
TU51320 other upstream 148612 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 651928 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 755535 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 852140 14428313 ~ 14433201 (+) True G40999
TU50637 other upstream 2794919 12489799 ~ 12490422 (+) False AMCG00012894
TU51437 other downstream 189363 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 332969 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 3737745 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5981859 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 6083027 21370843 ~ 21418787 (+) True AMCG00013126

Expression Profile