RNA id: TU51457


Basic Information

Item Value
RNA id TU51457
length 2459
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G41282
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15556146 ~ 15559305 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAATTCATTCTTAGTTACCTTTAAATTCTCCTCAATGCGCTGGGGGGTGATGGATTTAGGGATGGCAATGACATTCCTCTGGATCTGAAAGCGGAGCaaaacctgaaaacaaacacaatcattaagATCTCCTTTCCAAACCAGTTTTAGATCATCATGGGAGGAAAACACACAGAATGGGATGAGTGGAAATGTAGAAACCTTAAAACAGATATCTAGATCCAGTTCTAGCTAGCCTCTCTATTCTCATTTGaacacacatttgaaaataacaatttatacATGAATGGAAGCTATATTAcccatcatgtttttttttggtagctATAGTAACATAAATGGTGTAATAAGTTCAAGTATGTTCTTGAATAATCCCACAGAGTCAACATCAGAAGCATGACTCGGAAGTAATTTCCAGACTAGTGTGTGAAGggatgtgggaaaaaaaaaaattatatatatgcgcatatacacatacacacacactactggcCAAAAGTtatagaacacccccatttgtccagtttttattgaaatgtaagcagttaacctgaataacctgaaatggtacaaaggtaagctgTAAACTgccaggtttaaaaaaaaaaaggttaggttaccaaaaactgaaaagtaatgtacatttcagagttatatactgttttactacaccctcttaagcattatttggcagctCCTGTGCACAGAGGTTACACTGTATTTGTACAATAGttcacatcgtttgaaagcttattctcttggctaccagtgcgtttcattctcaaacacatctgatttacagtttccatgttgcctgctgtcattcagagcccggggagTAAATGCGCAGTCTgctctggggggggggtgtctcagcagtgaagagtacacatgggattgaagttaaattaaaattatttgttctatgctttaatttcagagtacattgagacattaaactgcgtacatttcaatgaaaactggaaaaatgtaggtgttctaaaacttatACTGTACTAGAGTGAACTGGGTGGGACTGGGaaagttttaataataaagctCTTGGGACAGGCAAGAATGGGATTTAAGTTTCTGGTAATGGGTAAGAACAGGACCTTATGCTGAAACAGAAGTCAGGCCTCAGACTTGTTACTGGGCAAAGAATGTGATAGAATGATGTATGTGCAGGATGTGCAAGCTAAGCTTTTGaatttgttatacattttccacagtGCAAGAAATGAGGAACTAAACTATATGATCACCATATTTGCAAATGTGTAGATACATGCTCACTTGAGCCACTTCCTATAAGAACTCAGAGAACTTGCATGAAGAGAACTTGCCTTCTCTCCTGCAGCTGCAGTAATAAAGCGTAGTTTTTAACCCAAACATGAAGTGAAGCTTAATTTCTTCGAcaattaattgaagtaatttgcttatttgacttttaaaattgtgtattaaGTGATTCCTTGATAAGATAAGTtccatatacaattatatacttgacttaaaatgtactaaaatgtatctactgtttaaaatgtaaaggctCCGATTTAAgaaagttcaattaagggttcaattaagtaaatcaagagctcggttggaacaaaaaccagcagggtaggtggtactccacgACCAGGGTtaagaaccactgctttaaactAATTTCCACTTGTAACCTCAGTGAACCCAAATTCCACGTTACTACTCTAAGATGACCCCCAACAAGAGAGACCATTGATCTAGTCTTACATAGTTGGACACCAAAACTCCCTCTGTGCAGGTTACTGGAACACCTGaattacagaaaatagaaaCTTACCATGGTCTAGCAACCAGCAGCAGAGCTGTGAGGCGAGGAGCATACTGACTGAAGCAAGTATGGATTAAAGTAATAAAGCCATGTCAACTGTGAACGCTGCCTCATTTTCAACAGGCAGGCTGTATTGTAGTTCCTAAtgtgatacaaaataattgatttctTAAAACTATTACCGATTCCTTTTGTGGAGACCCATCCAAAATAATACAGTCACATTTACAGTCCAACGTCGAGGGACCTCTATTCATCTACCTGCGCTGTGGACTTCTTGTGCTTCTCAGCAATGGCCTTGATATTTGGATCTTCCAGCAGGGAAGGATCTTCTGGTTTGGCCCATGGTCTATCTGGAGACCCTAGGGGACTGTAAGCCGTCACAGAGATCCCCTTCGATTGGCAATACCTTACGAGCTTTTCCTGAGTCAGGTATGGATGGGATTCAATcTGGTTATTGGCAGGTTTGTACTTCAATCCAGGCTTGTTTAATAGAATTTCAATTTGGTCACGATTGAAGTTGGAAATCCCAATGGCCTTTACCATTCCCGCATCTACCAACTCCTCCATACCCTCCCAGGCGTCTACAAAGCTGGTGTCATCCGCAATTACTAACTGGTTGTCATCCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51439 lncRNA upstream 72825 15480691 ~ 15483321 (+) True G41265
TU51392 lncRNA upstream 254585 15301188 ~ 15301561 (+) False AMCG00012961
TU51390 lncRNA upstream 268330 15285341 ~ 15287816 (+) True G41230
TU51381 lncRNA upstream 270858 15237287 ~ 15285288 (+) False G41225
TU51458 lncRNA downstream 7200 15566505 ~ 15569834 (+) False AMCG00012973
TU51460 lncRNA downstream 11601 15570906 ~ 15573468 (+) True AMCG00012978
TU51480 lncRNA downstream 160202 15719507 ~ 15722866 (+) True G41303
TU51492 lncRNA downstream 223121 15782426 ~ 15790144 (+) False AMCG00012987
TU51493 lncRNA downstream 223121 15782426 ~ 15791627 (+) True AMCG00012987
AMCG00012974 mRNA upstream 2094 15545635 ~ 15554052 (+) True AMCG00012974
AMCG00012972 mRNA upstream 24537 15526034 ~ 15531609 (+) True AMCG00012972
AMCG00012963 mRNA upstream 80276 15420843 ~ 15475870 (+) True AMCG00012963
AMCG00012961 mRNA upstream 238802 15297962 ~ 15317344 (+) True AMCG00012961
AMCG00012960 mRNA upstream 276899 15274952 ~ 15279247 (+) True AMCG00012960
AMCG00012973 mRNA downstream 7188 15566493 ~ 15569943 (+) True AMCG00012973
AMCG00012978 mRNA downstream 12451 15571756 ~ 15572208 (+) False AMCG00012978
AMCG00012980 mRNA downstream 56952 15616257 ~ 15618444 (+) True AMCG00012980
AMCG00012982 mRNA downstream 61430 15620735 ~ 15631003 (+) True AMCG00012982
AMCG00012983 mRNA downstream 72121 15631426 ~ 15639738 (+) True AMCG00012983
TU51437 other upstream 76780 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 419417 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 922733 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1026340 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 1122945 14428313 ~ 14433201 (+) True G40999
TU51470 other downstream 61480 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 3466256 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5710370 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5811538 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5867355 21426660 ~ 21486808 (+) True G42344

Expression Profile