RNA id: TU51575


Basic Information

Item Value
RNA id TU51575
length 882
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G41386
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15638879 ~ 15639990 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTGGTTCTGCAATTGTcatcttgtaaaataaaacctacaatTGACTATGTatatgatattttttaaatggtcataatgttatagttttatttttttaatgtgaattaccaataacttttttttctatccTCCCAATTTGAATTTGCTAATTGTTCATCTAGTGAAGTGTAGAAGGGATGTAGGCAGTGAATGCATGGATTTCTTGTAGTAATTTTCACACAAGATTATATTAAATCAAGtatatttgttgtcttttttgaaaaaatatcaTGCCTTAAGAgtaaaaagatacatttatcAAATCAATCTAAGCAGTTACATTGttgcttaaaatgaaaaaaacaaagaaatacaactataaaacacatgtttaagagtgaataataatgtagaaTATAATAACagaatggaataaaatacacttaaaaaaaatctacatgtGTAAAAAAtagcatatttaaatacaagagTTTCCAGCCTCTGACACAGTGGCCTGCAGAAGCCTCCGACACGGCGATGGCACAGGGGGCTGCTGGAATGGAGACCTCAGGAGGTTTTATTCACTGTTCTCTCCAGCTCAATCACTTTTGTGGTCTCATTTGCCCGCTGCTCCAAATGGGATCTGTCAAACCAACAGTAATGGACAAAGAGTCTGTGAGGATGAACATCTATAAGTATGGCTTTCTTCAGGTGCGAGTCACTGCTGTTCAGGTACCGCGTGTGCGGTTCGGCTGCTACGTGTCTCTCCGAGGCTTGCTGCTCTCTGTGCCAGGCTGATATGGAATCAGGTCGCCTGTCCCACTTCTCCACATTCTCCCCCGCCAGCCCAGAGGGGTGCGGCTCCTCAAAGCCACTGCGATCCTCATAACCCAGGAGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51558 lncRNA downstream 69028 15566509 ~ 15569851 (-) True G41369
TU51406 lncRNA downstream 360567 15237290 ~ 15278312 (-) True G41243
TU51378 lncRNA downstream 403017 15235620 ~ 15235862 (-) True G41224
TU51335 lncRNA downstream 561059 15075434 ~ 15077820 (-) True G41191
TU51268 lncRNA downstream 716563 14842243 ~ 14922316 (-) True G41138
TU51580 lncRNA upstream 79565 15719555 ~ 15722457 (-) True AMCG00012985
TU51593 lncRNA upstream 150302 15790292 ~ 15822009 (-) True G41402
TU51637 lncRNA upstream 315445 15955435 ~ 15956038 (-) True G41442
TU51638 lncRNA upstream 316109 15956099 ~ 15959544 (-) True G41443
TU51639 lncRNA upstream 319686 15959676 ~ 15960333 (-) True G41444
AMCG00012981 mRNA downstream 43541 15570993 ~ 15595338 (-) True AMCG00012981
AMCG00012976 mRNA downstream 73263 15554199 ~ 15565616 (-) True AMCG00012976
AMCG00012979 mRNA downstream 101656 15536669 ~ 15537223 (-) True AMCG00012979
AMCG00012975 mRNA downstream 115950 15512472 ~ 15522929 (-) True AMCG00012975
AMCG00012977 mRNA downstream 129357 15492361 ~ 15509522 (-) True AMCG00012977
AMCG00012985 mRNA upstream 79523 15719513 ~ 15722309 (-) False AMCG00012985
AMCG00012984 mRNA upstream 86004 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012989 mRNA upstream 163967 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012995 mRNA upstream 274238 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012994 mRNA upstream 310846 15950836 ~ 15955239 (-) True AMCG00012994
TU50830 other downstream 2523392 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3385436 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6525803 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9182701 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13454716 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2240235 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2314073 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2536071 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2602760 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3337070 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile