RNA id: TU51593


Basic Information

Item Value
RNA id TU51593
length 1360
lncRNA type sense_over
GC content 0.34
exon number 2
gene id G41402
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15790292 ~ 15822009 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgatcatttctttgtcaNNNNNNaaacgtacaaaatcagcaggggatcaaatacttttttcccctcactgtaggtatatatatgtttaagtGATTTTCCTGAAAACAGCACCTAGAAATGTCCGATAGTATTATAAAACTAACAGTTTCTGGCTTTGTCAAATGTCGAacatctattattatttctgcttcacCCTCTATTGTCCATGGGCAAATTGTACTGAATACACTAATTAGATTGCAatataaatggagaaaagtattttgtgATTCTTTAATACATGTGTTTTCTGAAAACTCACTGAATTAAATCACGTTgcactgtttttcctttttgcacgtttaacattatttccacACTGAAACCTAGGTGATAACAAAGgcagtctttaaaataaaaaaagcaatttatttcaATACTGAGTAATGCAGTTTTCGTAATGCCATCATATGCGAGtcagcttatttttttaaaactaaatatttggaGGTTTATAAATGGAACACCATCTACTGATCCTTCATGTATATTTAGTTGCAGACTTATGGCTTAAATTAACTGAATGCATAGTTCCACTGTAATTAAGTTTAGAATTGGAAAATCCTATAATTTGGAATGTCTGTCCTAGAAGATGTTTCAACCACAAAAGGAAAGACTTATACTAGACCATTATCTCTTTCTTGAATTTAGTATTCTGTATTCATAGTAACATTTTCAGGTGTTGGTGTATTCTGCACAACATAAAGAGACAACAGCTGTGTacgttcatttaaaaaatataaaataatatacttttaattttaataaaatttaaaGAGCCAGCAATATAAGGTGCACATATTTCCTCCCTGGCTGGGGACACAGGAAAGTGCAGTATTAACTATGGTGATACCAAAGCCCAAACAGTGAGTCTCAAATATCAAAATATCTTTATAATGTTTGTTCTTGGAAGAAAAAAGACACTTGTTTGTAAACCAGCACGAAGTCCAAAATCCagaataaatgaaacaaaaaaaaaacccacccTGAACCTTTATTTATGTGGGATTTTTCTTTGCCCTATTTCTTACTCAACTTATCACCCTAAACAAGTCCAACACAGGCAGCCATGTTTTCAAAGAAGCTCTGTGAAAGCACAGCAGTGTTTGATGTCTGGTATAAGCTGGATATTGCTGCGATTCAAGCACTAGAGTTCTTCTGTCATTTTTGGCTGTACTTCCTTAAGCAGTTTTGAGGTTATGTTCTTGGAGGAATAGTTGTAATTGTTCTCCCTATGGTGCACAATGAGGGAGTTTAGTTCCATATATCTGCAGGCATGACCAAGTTAGCATTGAAGTTTTAGCTGCCCTTGGAgaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51580 lncRNA downstream 67835 15719555 ~ 15722457 (-) True AMCG00012985
TU51575 lncRNA downstream 150302 15638879 ~ 15639990 (-) True G41386
TU51558 lncRNA downstream 220441 15566509 ~ 15569851 (-) True G41369
TU51406 lncRNA downstream 511980 15237290 ~ 15278312 (-) True G41243
TU51378 lncRNA downstream 554430 15235620 ~ 15235862 (-) True G41224
TU51637 lncRNA upstream 133426 15955435 ~ 15956038 (-) True G41442
TU51638 lncRNA upstream 134090 15956099 ~ 15959544 (-) True G41443
TU51639 lncRNA upstream 137667 15959676 ~ 15960333 (-) True G41444
TU51640 lncRNA upstream 139348 15961357 ~ 15961841 (-) True G41445
TU51643 lncRNA upstream 143928 15965937 ~ 15966308 (-) True G41448
AMCG00012984 mRNA downstream 31622 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012985 mRNA downstream 67983 15719513 ~ 15722309 (-) False AMCG00012985
AMCG00012981 mRNA downstream 194954 15570993 ~ 15595338 (-) True AMCG00012981
AMCG00012976 mRNA downstream 224676 15554199 ~ 15565616 (-) True AMCG00012976
AMCG00012979 mRNA downstream 253069 15536669 ~ 15537223 (-) True AMCG00012979
AMCG00012995 mRNA upstream 92219 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012994 mRNA upstream 128827 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012999 mRNA upstream 149123 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012997 mRNA upstream 196721 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012998 mRNA upstream 215874 16037883 ~ 16074028 (-) True AMCG00012998
TU50830 other downstream 2674805 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3536849 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6677216 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9334114 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13606129 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2058216 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2132054 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2354052 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2420741 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3155051 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile