RNA id: TU51638


Basic Information

Item Value
RNA id TU51638
length 3446
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G41443
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15956099 ~ 15959544 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCTTTATGTAGTGCCTTGCTCACTCCACCAAACTCGGTCTGAGTTTGGCAGCGAGGTAACTTACTCGTCCCCCTCAGGACAGCTGCCCGAGCCCTCCTCGTATTTGGTGCAGTAGATGTCGGGGCTGTAATTGAAAGTGCCGTCGCGGCGGCGGACGGGGCGGCGGCGGCGCTGGTTGATGAAGTGCCAGTTGAAGCAGGTGAAGGGTCGGTGCTGGGAGCACTTGTGCTGCACAAACAGAGGGCACTGCTCTGTACGAAACTCCTTCAAGtacctgagacacagagagagaaggcgATAGGAAAAGGATGAAAATGTAGAAAGCAtgacacagaagaaaaaaatattatacgGTGGTGTTCAAATATATTCAGAGCAATGATAAAGTGTAACTAAAAACTGAGCAAGGAAATGCAGGTGTATTCTCAGGATTGTTCTATACTAATGCAGTAAATCAAGAAGTAGAGAACGGTTTATTTATCAATATAGAATGTATTAAGAGCATATATGTGAGAAACAGTTCTATATACAAATTTATTCAGACACAAGCTTTGTGTAGCTTTTTAATGGGTTCAAAACAGCTTCTCAGGAGGAATATCTATAAAGAACTTCTCCAACTCTTCCAGGTCCCAAGAATACAATTTGAACATCATGTATTTAGAAATACTGACCAATGTCCTATACAACATTGGTATCAACATTTTGAATAATAGTGTGTATCTGCAGTTCCTTGCTTTTTAGTCACACTGTAGCTAAAGCTGATCACCTGGAATACTTCAAGAAAGAGCTGGATCCTTCATAACTTTTCTTGTGTTCTTGGGAGTATTCTGACATTTTTCCTGTTGGTTTAAGTCTGAATTGAGTCCATGCTTAAAGTCTTACCTAAAGAGTAAATAGCTTGTGCAGAGTGACAATAGCATAAATTAGTATCTGTATCCAATGTATAACACTCATTTCAGCCACTTCATAGAAATCAGTGGCAGTCATGTACACCCCACTAGTCTTAACTAAGTTCAATCTTTATagtttgcatttccattgtgtttccatcagtgttcaacaaactctgaaacaTCATTGATATAAgcatagtaaataaataactgaatcgCTCTGTTTCAAGTAAGGAGAatgaatacttttgactacAATTGAAATTAATAGTCAAACACAATAACAGTTTTCTTTACAGGAAAATATAATATcagcacaaaaacaagaaagagaaaacatataACCGGATGAATCCTCACAGACGTAGTGCATGATGAGTGGATATCACAAGCAATGACCTTGAAATACTTCCGTACAGCCAATAACAGAttcataacaaaaacatgactttATATTAAGATAATTTAACACCTTCTTCCTTTATCAGCTAAATCATCACTGAATTTCATCCAGCTGTTTCTTGAAGTAACTTCAAGTTTCAGGTTCAAACACATCACTATTCCTCATTTCACTTATTAACTTGAAATAGTTCTTGGCCTTGTATTATGTACCATGCTTAAGTATATAATCATGTCATTCCAACCTAAAAAGGGGtttctaaatgcatttagtTGAATAAAAGGATCTGTTTAAACAAAAGGcagagtttttaatttttggaaCCACCAGCTACATTTCAACTGTTCATAGTCAGACATCAATGAAATGTCACGATAGCCCTCCTCCATGAACAggctgaggaagaggaggcccGACATTCATACCTCaaacaaataggaaaaaaacaatcatgaatAAGGTTAAATCACAATAGGGTTGTTCAgcctacaaatgtatttatttaaaggtgcATATTctacctttaaaacaatatttcctGCTACAAACATCAATGTAATCATaaaaatgacacacaaaaacactgaagtgCTGACCAGATGCgtttaaaagttaaaacataGTAGGAGACTGAGTGAATAGCAGAATAGTATTTGTTTCACGACAAGCCAGCCTGAAAATTGTTGACTTACAGCTGCCAAACAAGTAGGTACATAAAACTAAATGactgaaaaacatcaaaaaggGGGTTAGGGTAATAAAATTGGGGTTACTTCAGTCGCTACTTTGGTGTCTCTGTTGTGATATAACAttacaacaataatagtaacaCTATAGAACTATGGACAAACTCActgctgaaatgtgaaattgttGGGGCCAGGCAATACACTGATCTCTTGTCGTGGTCATAATTGATATTCccattactactactacgacaaacacaaacatcctATTTATGAGTAGGTGTTGTTACCAATGTGAAATATGATCGGCGTGCATGTCGACAATTGAAACTTCATTAAAGCCTCGTAAACATAACTTATGAACGGCCTCGATGtgaacacattgttttttaatgaaccAAACGAATTCGACAATTCGAACGACAGAACATGATTCGTTTCGAACCCCATTTCCCCAGAAGCGGACTGACTCCGACCGGTTCCCACGGGACtcggccgggccgggccggatCGAACCGGATAGAAGCCGCCCCCACGAGCCCTCCCCTTCCCCCGCCACGTCAGGTGAGGCCTGCGCGCGGCCGTGGCACGTACGTGTAGTGCTGCGGTTTCTCGGGCTGCGCGTGCAGCGCGCTGGCGGGGGACGCCGAGCCGCCGGCCGCCCCGGAGGCGGAGGTCGCGGGTGCGGCTGATCCAGCGGCGGCGAGGGAAGCGCTGGCTGGCGCGGGGCCTTTCgacatgtttctctctctctctctctccgccacTCTTCCTTTATTATTGTTCTCTACACTACGAGGTCCGCATTCTTCCACACAGTGCGcttgcgcctggcacagggaaGGGGAAGCGaacggggggaggggggacacCGGCCGAGAGGACCCTGGGAAATGTAGTGCTCGGACCTCCTGGCTACACGGAGGAAGACTGTGAAATATAATAGCCCTACAATGTAGAGTCTCTTAAATCGCCACTGCATGATTTACTGCAAGTGTACACTGTATCCAGACATGTGTGTGTAAAGAAAGCGGGGTTTAAGCTATGGTTGTTTTGGAGGAAACGAATGCGCTATAATCCTGCTGGAACCTGTTCCATGAAACGATCTCACCAGCGTACAATGCCGTCCTCCTCCCACACCTCCCCAGCGCACTGAGACACAACGACACCAGCGACTTAAACTAACCTTAATCTAGTTGCCAACGGACCGTTGCATTTTGTCCACTCAGATGCGTTACTTTAACATCTTATAGTCAATTGTGAATAATCGCAATATGGCCCGAGACCTCTCGAGTCCGGGACACACCGGACGGATGGCAGAGCCGGTGTGTGCGGCGCCGGTGACACTGCAGCTCTGCGACCAGCCCAGTCCTGTGAGCCGCGGCTGCCGCACCACTTTGACGCGTGTTTTTAAATAGACCATGTATTTTCATGAATGccatttgaaagattttaagTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51637 lncRNA downstream 61 15955435 ~ 15956038 (-) True G41442
TU51593 lncRNA downstream 134090 15790292 ~ 15822009 (-) True G41402
TU51580 lncRNA downstream 233642 15719555 ~ 15722457 (-) True AMCG00012985
TU51575 lncRNA downstream 316109 15638879 ~ 15639990 (-) True G41386
TU51558 lncRNA downstream 386248 15566509 ~ 15569851 (-) True G41369
TU51639 lncRNA upstream 132 15959676 ~ 15960333 (-) True G41444
TU51640 lncRNA upstream 1813 15961357 ~ 15961841 (-) True G41445
TU51643 lncRNA upstream 6393 15965937 ~ 15966308 (-) True G41448
TU51644 lncRNA upstream 8562 15968106 ~ 15968353 (-) True G41449
TU51647 lncRNA upstream 47870 16007414 ~ 16007791 (-) True G41451
AMCG00012994 mRNA downstream 860 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012995 mRNA downstream 31695 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012989 mRNA downstream 147414 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012984 mRNA downstream 197429 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012985 mRNA downstream 233790 15719513 ~ 15722309 (-) False AMCG00012985
AMCG00012999 mRNA upstream 11588 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012997 mRNA upstream 59186 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012998 mRNA upstream 78339 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00013002 mRNA upstream 121717 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00013004 mRNA upstream 140772 16100316 ~ 16104419 (-) True AMCG00013004
TU50830 other downstream 2840612 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3702656 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6843023 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9499921 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13771936 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1920681 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1994519 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2216517 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2283206 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3017516 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile