RNA id: TU51640


Basic Information

Item Value
RNA id TU51640
length 485
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G41445
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15961357 ~ 15961841 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTGAAAAATCCTCTCGTTAGATTGTATTCCAGGGTCAAGTGCTTACTGTTGTTGAAACAAAGTGAACAGTCTTCAGATGTTGGTGCATTTTGAGTGCTTGTGGTTGGGTGTCGGAGGTATTTGGAAATGGGCAAGATAGTTTCTCTATTTTAGCAACTGCCAAATTCCACCAAACTGCCAGTGAACTATTTTTGACTGTTAAGTACTTCTTTTGTTGCTTTGCTCATGCTGTAAGATTATATAAGGAAACTTATTCATATGTAAAGTTTGAGATAAATTACAAGGAAATGATTAGAATGAAAGTAAAgagaaagacaacaacaaaatcgTCCTCTGGGCCATTATATCCAGCTGGCATGGCGTTACCTCGGGGTGGAACTGCTGCTCTGTGCGTGTGTGGCAGTACTGGCAGCCGTCTCCTCCATCGCACTTGGTGGGGTCTCCCCACTCGTCGCTGTGCTTCACTGTGGGGCAGGGCAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51639 lncRNA downstream 1024 15959676 ~ 15960333 (-) True G41444
TU51638 lncRNA downstream 1813 15956099 ~ 15959544 (-) True G41443
TU51637 lncRNA downstream 5319 15955435 ~ 15956038 (-) True G41442
TU51593 lncRNA downstream 139348 15790292 ~ 15822009 (-) True G41402
TU51580 lncRNA downstream 238900 15719555 ~ 15722457 (-) True AMCG00012985
TU51643 lncRNA upstream 4096 15965937 ~ 15966308 (-) True G41448
TU51644 lncRNA upstream 6265 15968106 ~ 15968353 (-) True G41449
TU51647 lncRNA upstream 45573 16007414 ~ 16007791 (-) True G41451
TU51648 lncRNA upstream 47101 16008942 ~ 16009394 (-) True G41452
TU51649 lncRNA upstream 47995 16009836 ~ 16010242 (-) True G41453
AMCG00012994 mRNA downstream 6118 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012995 mRNA downstream 36953 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012989 mRNA downstream 152672 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012984 mRNA downstream 202687 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012985 mRNA downstream 239048 15719513 ~ 15722309 (-) False AMCG00012985
AMCG00012999 mRNA upstream 9291 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012997 mRNA upstream 56889 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012998 mRNA upstream 76042 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00013002 mRNA upstream 119420 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00013004 mRNA upstream 138475 16100316 ~ 16104419 (-) True AMCG00013004
TU50830 other downstream 2845870 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3707914 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6848281 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9505179 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13777194 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1918384 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1992222 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2214220 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2280909 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3015219 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile