RNA id: TU51647


Basic Information

Item Value
RNA id TU51647
length 378
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G41451
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16007414 ~ 16007791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGTGTGATGCGGATCTAAACTCAGTCCCGTCGCTGACGCTGCGTGCGGGTGTCGTTACCTCTCACTGTTGTTGATAATCAAGCCCCCACAATCCGAGTTGTTCTTGTTTAGCGCCATGGCGCCGTCCCGTCCTGGATAACTGTAGTTGCCGTTatatggtgttttgtttttgtgactctctctctctctctctctctctctctctctctctgcgcaCACACAGCGGTGCACCTGCACTTCCGGCTACTGGAACACTCGCTGTGACGTAGAAGCGCGGACACGCCCCTCCGAGCATGATCTGTCGCCCCGGAGTCGATTGGCCGGTTTGATTAGCTTTTTTTATCCATCTTTTGTCGACAGAATggtgggaaaaaag

Function

GO:

id name namespace
GO:0008213 protein alkylation biological_process
GO:0043414 macromolecule methylation biological_process
GO:0006479 protein methylation biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0016571 histone methylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51644 lncRNA downstream 39061 15968106 ~ 15968353 (-) True G41449
TU51643 lncRNA downstream 41106 15965937 ~ 15966308 (-) True G41448
TU51640 lncRNA downstream 45573 15961357 ~ 15961841 (-) True G41445
TU51639 lncRNA downstream 47081 15959676 ~ 15960333 (-) True G41444
TU51638 lncRNA downstream 47870 15956099 ~ 15959544 (-) True G41443
TU51648 lncRNA upstream 1151 16008942 ~ 16009394 (-) True G41452
TU51649 lncRNA upstream 2045 16009836 ~ 16010242 (-) True G41453
TU51650 lncRNA upstream 3221 16011012 ~ 16011364 (-) True G41454
TU51651 lncRNA upstream 6345 16014136 ~ 16016021 (-) True G41455
TU51660 lncRNA upstream 27856 16035647 ~ 16035936 (-) True G41460
AMCG00012999 mRNA downstream 7532 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012994 mRNA downstream 52175 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012995 mRNA downstream 83010 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012989 mRNA downstream 198729 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012984 mRNA downstream 248744 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012997 mRNA upstream 10939 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012998 mRNA upstream 30092 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00013002 mRNA upstream 73470 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00013004 mRNA upstream 92525 16100316 ~ 16104419 (-) True AMCG00013004
AMCG00013001 mRNA upstream 100824 16108615 ~ 16128233 (-) True AMCG00013001
TU50830 other downstream 2891927 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3753971 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6894338 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9551236 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13823251 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1872434 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1946272 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2168270 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2234959 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2969269 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile