RNA id: TU51649



Basic Information


Item Value
RNA id TU51649
length 407
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G41453
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16009836 ~ 16010242 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCCGGCTTCAGCAGTCACAGTTCCCTTGATGTAGTTGGCCCCAAGGACTGGCTGCTTCACCTCACAGCCTTTCATCAGGTAGAAGGGCATCATGAAAGACGTCATGGAGTCCTTGCCTTTGGTCAGGAAGATGACCtacaacaaaattaatagtTAATTTGTCCTGTATTTAATTCATGTTAATCACATACCTAGTGTAGTGAATGAAGGCTGCATCCTATTTCTTCTGGTCATGAGGTGACTTTACATCTTTATAATGAGTCTGGTCTACAAAATAAGGTCATGCAGAAGGACTGCATATCACCCACAGTGAACAGCCTGAAGGATTAATGTGATTGCTTGGCCTTAAGCATAATTCAAGGCCTTGAGGGTCACAACAGGCACTGAGATTCCCCAGGCAGTGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51648 lncRNA downstream 442 16008942 ~ 16009394 (-) True G41452
TU51647 lncRNA downstream 2045 16007414 ~ 16007791 (-) True G41451
TU51644 lncRNA downstream 41483 15968106 ~ 15968353 (-) True G41449
TU51643 lncRNA downstream 43528 15965937 ~ 15966308 (-) True G41448
TU51640 lncRNA downstream 47995 15961357 ~ 15961841 (-) True G41445
TU51650 lncRNA upstream 770 16011012 ~ 16011364 (-) True G41454
TU51651 lncRNA upstream 3894 16014136 ~ 16016021 (-) True G41455
TU51660 lncRNA upstream 25405 16035647 ~ 16035936 (-) True G41460
TU51713 lncRNA upstream 159067 16169309 ~ 16208177 (-) True G41506
TU51721 lncRNA upstream 207139 16217381 ~ 16217595 (-) True G41510
AMCG00012999 mRNA downstream 9954 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012994 mRNA downstream 54597 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012995 mRNA downstream 85432 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012989 mRNA downstream 201151 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012984 mRNA downstream 251166 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012997 mRNA upstream 8488 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012998 mRNA upstream 27641 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00013002 mRNA upstream 71019 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00013004 mRNA upstream 90074 16100316 ~ 16104419 (-) True AMCG00013004
AMCG00013001 mRNA upstream 98373 16108615 ~ 16128233 (-) True AMCG00013001
TU50830 other downstream 2894349 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3756393 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6896760 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9553658 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13825673 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1869983 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1943821 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2165819 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2232508 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2966818 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile