RNA id: TU51686


Basic Information

Item Value
RNA id TU51686
length 1676
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G41484
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16121443 ~ 16124871 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGAGTATACCTTATTGTTTGCTATGGGGCAAAGTAGGATGGCACAATGAAACCCTGAATTCAGTGCAATGGGAGCATTCCATGTGCAGGGCAGGAGGGCACAGGCTGACACTCACCTGGGCAGGCAGAGGTGAACATGGGCAGGGCATGCTGGTCCTGGTTCCTCCGCCGGTGCCGCTGGACAAATTCCCTCTGGCTCTCCAGGAGGCTGAAGTCAGCAGCCAGTGTGGCATCAAACACATGGTGCACCCCTGGAGAGGAGTACCAgaggcagtgagagagagaccctAGTGCCTTAGCTTCTTGTCAAGCTGCTTTACACTTCACAATTATTGCCAGGAATACATGTCATCTATAATTGCTAAAAAAAAgtcctatttatttatatgttttttttctgcccaTTTAAGCTTTAGAGCATTACAGAACCTCTTCAGAAATTCAACAGAAAACAGATACAAGGGTATTCAAGTAAACCACTACATATTGATGCGACTGTGCCATGTCTAGATTTCAAATATGGTTTCTTTGTATGAATGTTTCTGCAACATTGTGTAAATCATGTGCAATTTTCATCTGTGTATCCAGGTAGTCCAGGttcagtgcagtgtctgtgtaactggttttagaaaaacattttcatccaaggccatacaGAGAACAGACAAAAAGAAGTttgtgataaagtttggggtacctcatTGACGTCATGTAGTTGCTCAGCAACCAAGGGAGtaatcttctatatgatagtatgttctttcCAACTGACCGTCCCTGGAGCGCTTTGTTATTGCTGAATAAACGACTTtgatattattctaattaaattggGCCTATtacatacaatattaaataccCTTACTGCTTACCGAGCAGGATCtccaaataattgaaaaagatTTGATCATTCTAGAAACGTCTGTATTGTAAGACTAACCTTACTCCTGTAATTTCAAAGCCTATCAAAAGTAGCTGTTGCTCCACAAGAACAGAAAGCACAATATCTCTATTGTTATCTCTACTGAAGACACATAAAtggtttaaattacaatatctttatacaaatctctttaaaatgcaatatttataaattgttaTTATAGAGAATGTCAGTTTTCCTAAATGGATGAATTGTTATCTTTAGGCACTAGGTCACTTCTTATGACACTTTCTGTATCTTCAGGAAGAACATGTTTTGATAGCCTCTGAAATGACAGATGAATATTTACATGTACAAATCCTTTACTAAATTACTAATTTCATAGCGTTAGATTTTTTTCCTGATCACCTGTTCATCCTCACCACATCCTGTCAGATATCAAAGGATAACAGTTATGCATGCTTGCCGATATGATCAAACATGGTGGGTGTAACTAGAGGACTGCCAGCACTTACCTATAGTTTTTAGGAAGCCACAGAGTTTTTTGGTGGCCTCTGGTATGCTGAGGTTAAATCTGGCAGCAAAGAAAGGCAGAGACTGGGGGCACAGAGAAACTGCCAGCACTTTGTGTTTTGAGGTATCGCATTCTTGTTAAGGCTAAGAATCTGAGAGAGCTGCTGAAGGTTTTGCTGGGATATCCTCTGGCTCTCCTCTTCGGTGACGCACCGGTCACACGCCAGGCAGTCGCTAAGGtacactctctctcccaccaGCTTATGGAACTCGCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51669 lncRNA upstream 47344 16073514 ~ 16074099 (+) True G41469
TU51508 lncRNA upstream 262073 15859064 ~ 15859370 (+) True G41325
TU51493 lncRNA upstream 329816 15782426 ~ 15791627 (+) True AMCG00012987
TU51492 lncRNA upstream 331299 15782426 ~ 15790144 (+) False AMCG00012987
TU51728 lncRNA downstream 208419 16333290 ~ 16333574 (+) True G41517
TU51750 lncRNA downstream 458531 16583402 ~ 16583699 (+) True G41536
TU51751 lncRNA downstream 498549 16623420 ~ 16623650 (+) True G41537
TU51777 lncRNA downstream 594484 16719355 ~ 16723060 (+) True AMCG00013015
TU51778 lncRNA downstream 594484 16719355 ~ 16723060 (+) False AMCG00013015
AMCG00013000 mRNA upstream 92617 16022722 ~ 16028826 (+) True AMCG00013000
AMCG00012996 mRNA upstream 107133 16008943 ~ 16014310 (+) True AMCG00012996
AMCG00012992 mRNA upstream 150205 15957831 ~ 15971238 (+) True AMCG00012992
AMCG00012993 mRNA upstream 164443 15956821 ~ 15957000 (+) True AMCG00012993
AMCG00012990 mRNA upstream 171311 15928314 ~ 15950132 (+) True AMCG00012990
AMCG00013005 mRNA downstream 13128 16137999 ~ 16145425 (+) True AMCG00013005
AMCG00013006 mRNA downstream 30808 16155679 ~ 16183420 (+) True AMCG00013006
AMCG00013009 mRNA downstream 311193 16436064 ~ 16437861 (+) True AMCG00013009
AMCG00013017 mRNA downstream 518045 16642916 ~ 16677331 (+) True AMCG00013017
AMCG00013010 mRNA downstream 583401 16708272 ~ 16710011 (+) True AMCG00013010
TU51470 other upstream 490816 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 642077 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 984714 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 1488030 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1591637 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 2900690 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5144804 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5245972 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5301789 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 5360036 21484907 ~ 21486808 (+) False G42344

Expression Profile