RNA id: TU51713


Basic Information

Item Value
RNA id TU51713
length 970
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G41506
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16169309 ~ 16208177 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGTTGTGTCTGGCTTTTAttgactatgagaaagcatttgattcagtCTACAGGTTCAGACATCAGTActttaagaaatcaaaacatacataaatctTATTAAGGATAAGACTCCATCAAGAccctgacaagatcaagatcttcAAAGGAGTACGTGGATTTTCTTTACAACACTTGAAGTGTTTATGagtttggactgggaagaaaaaggaattaaGATAAACAGATTATTTGAATAACTTACAATTTGCTTATGACACTTTTGCCAAAATAAGTCCTAGTTCAAAGTCAGAAACTCTCAGatgaaagtaatacaaaataactaaaaccaAAATCATGTTCAAAAGCTTTGTGAAAATCAAGAAGATTGAAGTAGATGAAAAGATActtaaatatgtacagtattctatatatatcatcatcttCCTTTGTTGATCGACTGGATTAAAACCTTTccccagatatatatatatatatatatatatacactcacctaaagaattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggaaagcatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgggacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaattttcaggtaggccgtggcatttCAACGATGCCCAAGTGGCactaaggggcctaaagtgtgccaagaaaacatccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51660 lncRNA downstream 133373 16035647 ~ 16035936 (-) True G41460
TU51651 lncRNA downstream 153288 16014136 ~ 16016021 (-) True G41455
TU51650 lncRNA downstream 157945 16011012 ~ 16011364 (-) True G41454
TU51649 lncRNA downstream 159067 16009836 ~ 16010242 (-) True G41453
TU51648 lncRNA downstream 159915 16008942 ~ 16009394 (-) True G41452
TU51721 lncRNA upstream 9204 16217381 ~ 16217595 (-) True G41510
TU51729 lncRNA upstream 125054 16333231 ~ 16333595 (-) True G41518
TU51752 lncRNA upstream 415242 16623419 ~ 16623773 (-) True G41538
TU51754 lncRNA upstream 426785 16634962 ~ 16636441 (-) False AMCG00013018
TU51835 lncRNA upstream 938538 17146715 ~ 17146981 (-) True G41612
AMCG00013003 mRNA downstream 14454 16146243 ~ 16154855 (-) True AMCG00013003
AMCG00013001 mRNA downstream 41076 16108615 ~ 16128233 (-) True AMCG00013001
AMCG00013004 mRNA downstream 64890 16100316 ~ 16104419 (-) True AMCG00013004
AMCG00013002 mRNA downstream 84068 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00012998 mRNA downstream 95281 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00013007 mRNA upstream 41960 16250137 ~ 16251210 (-) True AMCG00013007
AMCG00013008 mRNA upstream 324573 16532750 ~ 16533847 (-) True AMCG00013008
AMCG00013018 mRNA upstream 422054 16630231 ~ 16639087 (-) True AMCG00013018
AMCG00013012 mRNA upstream 469983 16678160 ~ 16687304 (-) True AMCG00013012
AMCG00013011 mRNA upstream 508339 16716516 ~ 16718657 (-) True AMCG00013011
TU50830 other downstream 3053822 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3915866 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 7056233 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9713131 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13985146 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1672048 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1745886 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 1967884 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2034573 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2768883 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile