RNA id: TU51752



Basic Information


Item Value
RNA id TU51752
length 355
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G41538
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16623419 ~ 16623773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ggcacttagaagaggtagactggagcacactggatacagagtcagttgaaaatggatgggtatattttaagaatatactacttgaggctcaggagcaatttataccaaaacttagcaaattaaggaacaaaaaacactggccaaaatggtttaatagaggtatgcaaaaaaatataaaggggaagaaaatgttgtatagcgcatacaaaagggatggtgacgaaacaaaatacatagaatatgttgagctgcaaagagatcttaagaaagggatcaggaaagcaaagagggaaatagaaagaaacatagctcttggagctaaaaccaatgcaaagagcttttttcaatattacaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51729 lncRNA downstream 289824 16333231 ~ 16333595 (-) True G41518
TU51721 lncRNA downstream 405824 16217381 ~ 16217595 (-) True G41510
TU51713 lncRNA downstream 415242 16169309 ~ 16208177 (-) True G41506
TU51660 lncRNA downstream 587483 16035647 ~ 16035936 (-) True G41460
TU51651 lncRNA downstream 607398 16014136 ~ 16016021 (-) True G41455
TU51754 lncRNA upstream 11189 16634962 ~ 16636441 (-) False AMCG00013018
TU51835 lncRNA upstream 522942 17146715 ~ 17146981 (-) True G41612
TU51850 lncRNA upstream 678370 17302143 ~ 17302892 (-) True G41627
TU51871 lncRNA upstream 853089 17476862 ~ 17477270 (-) True G41647
TU51872 lncRNA upstream 854042 17477815 ~ 17479389 (-) True G41648
AMCG00013008 mRNA downstream 89572 16532750 ~ 16533847 (-) True AMCG00013008
AMCG00013007 mRNA downstream 372209 16250137 ~ 16251210 (-) True AMCG00013007
AMCG00013003 mRNA downstream 468564 16146243 ~ 16154855 (-) True AMCG00013003
AMCG00013001 mRNA downstream 495186 16108615 ~ 16128233 (-) True AMCG00013001
AMCG00013004 mRNA downstream 519000 16100316 ~ 16104419 (-) True AMCG00013004
AMCG00013018 mRNA upstream 6458 16630231 ~ 16639087 (-) True AMCG00013018
AMCG00013012 mRNA upstream 54387 16678160 ~ 16687304 (-) True AMCG00013012
AMCG00013011 mRNA upstream 92743 16716516 ~ 16718657 (-) True AMCG00013011
AMCG00013014 mRNA upstream 109156 16732929 ~ 16735796 (-) True AMCG00013014
AMCG00013013 mRNA upstream 132614 16756387 ~ 16768362 (-) True AMCG00013013
TU50830 other downstream 3507932 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 4369976 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 7510343 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 10167241 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 14439256 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1256452 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1330290 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 1552288 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 1618977 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2353287 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile