RNA id: TU51876


Basic Information

Item Value
RNA id TU51876
length 2030
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G41649
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17480579 ~ 17486682 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGTAATGTCTGTTTTCCTGCTTCTATTCTCAGCCATTTACAAAAAACTGAGTTCTCCCTTATCAGGTTCACAAACACAAAGTAACAAAAATGCACACTTGAAatctttcaatttattttggagggttttgttttggaaaacaaacttCTAACATTCTACATTCTACTTATACAGTcttgaaaatagaaaaagggTTTACTGCTTCTCAGAGAAAGGTTTCCATCAGCTTCCATTTTGAAATCTGTCCCTTTGATAGACCTGCTTTCAATATTGAATTGTATGTTTTGAAAGGGGATGACTGAAAGATGTTTTGCCATATTTGGTGCTTAAAATATGTACCTTCTAAGGATGCAGTGATGATTAAGATAATTCtagtttattataatttttaactatagtatgcatttgaaaaaagatTGATTACAATTGTATTGCAGGAAGCCCAGCTTTTAACCTTTGCTGTTACATGCAgtgataatttatttatacaatcaaatcaaacaaatcaacagTCAGGTGAATATCCTAGTACTATGACTGTTAAGCCTgctgtaattgaaaatattagaCTTATTTGTTATATAGTCCTCTCAGCTCTCTTGTGCTCTGAAAGGAATGTTTTGGGTTCCATCATATTCTGCTCTAATAAAGGCAATGcagaatttgttttgctttctttaaaattagTCCTATTTTACTTGATCCCTCTTTTCTCCCTTGTTTTAGTTAAAATCATGATGTAGCAATTGAAAGTCAGTCAGTTTAGAGTCTGGAAGTTACAGAAAGAATTATACATTTCGGAGTACCTTTAATATCTGTATTTTCAGATTTGGCTGCTTAGCAGAAAACACAAGTGCAAGAACTTATATTATAGAGAGCACTAAAATGATTGTTCTTATTAGTTGagtgttgttttcattgcaaccaatgtttttaaattcattctGATTTAGAGGTATTGCTAATTTGGACCCAGAGTTATTTCCTGAATATATTAAGAAATCAAAGAATACAAAAGATAAGAATTTCCATAAATACACAACGTTGTGAATACCTTTTATCCAGggttttcttaatttttccagttgcttccaaattaattttaaagctcTTGAGACTGGTGTGTTCATTAGTACTTGCTCGTTCTGTAATAAAAGTTGGGAGTTAAAGGTTGGAttagaaatgcaaaaatattgtttgttttcagaaaaacattCCATATTCTGCTTTTATCATGCAGTTGTAATtttttacattcttaaaaatgtaaaacaagatGTTACTGATTCTTAAAAAGTTAGTACTGCTGCCTAATTAGGAGAACGACCTAACTTGCCATGAGGCTGAAATTGGGTCTGActaattttattacataaatgtTCACTGCACATAAAACTctaatcttatttttaaaagcttgatAAATAAATTGGGTGATTTTTCTCTCAACATACATGTCTCCAGATATGAATGCAGTCATACATGAATTCAAAAAGGTCCTTCAAAGTGTAGATAACACGCatttatactattttattttataaatcagaGTTGTGGccaatacattttgcattgtttgtcTCTACCCTCAGTGCTGCAGGCACCAATACTTTGCCGAATGGCCCAACACTATGATGAAAAAGAGCCTAGATTTTGAACCTCTGCCTACCCTTGCCTGCAATTTCACATCAAGGAAATCCTtgcatgctttttattttcattttgcataaAGAAATCATAATattcaaacatgttttgaaaactttGTTTGGAgtgtggtatttatttatttattcccagtGTTATGTCAAAGGAGTTTTTTTGTCTGGAGATTTCACTGTACACTCTGGAACTGATTTTAGTCTTTGGTTTTTGGTtggtctctttaaaaaaaaaaaaaaaaaaaagttttcaattTGTCTACTGAcgcaatgttttcattttttgtaatatgtttaatGTACTGATTTAAACAAGATgtcaagatttttttaattattaaaaaatgtgatgcTGTGtcaaaaaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51874 lncRNA upstream 137 17480579 ~ 17484516 (+) True G41649
TU51878 lncRNA upstream 620 17482976 ~ 17484033 (+) False G41649
TU51862 lncRNA upstream 18594 17464901 ~ 17466059 (+) True G41638
TU51834 lncRNA upstream 337677 17146715 ~ 17146976 (+) True G41611
TU51794 lncRNA upstream 708608 16773349 ~ 16776045 (+) True G41577
TU51918 lncRNA downstream 90763 17577445 ~ 17577756 (+) True G41683
TU52002 lncRNA downstream 434488 17921170 ~ 17985309 (+) False G41740
TU52009 lncRNA downstream 443253 17929935 ~ 18013678 (+) True G41743
TU52003 lncRNA downstream 473044 17959726 ~ 17985309 (+) True G41740
TU52011 lncRNA downstream 517266 18003948 ~ 18005499 (+) False G41744
AMCG00013023 mRNA upstream 7897 17469606 ~ 17476756 (+) True AMCG00013023
AMCG00013016 mRNA upstream 727561 16747170 ~ 16757092 (+) True AMCG00013016
AMCG00013015 mRNA upstream 755120 16719460 ~ 16729533 (+) False AMCG00013015
AMCG00013010 mRNA upstream 774642 16708272 ~ 16710011 (+) True AMCG00013010
AMCG00013017 mRNA upstream 807322 16642916 ~ 16677331 (+) True AMCG00013017
AMCG00013032 mRNA downstream 22605 17509287 ~ 17517737 (+) True AMCG00013032
AMCG00013029 mRNA downstream 47163 17533845 ~ 17557349 (+) True AMCG00013029
AMCG00013031 mRNA downstream 76048 17562730 ~ 17563944 (+) True AMCG00013031
AMCG00013033 mRNA downstream 96443 17583125 ~ 17591701 (+) True AMCG00013033
AMCG00013030 mRNA downstream 114696 17601378 ~ 17638696 (+) True AMCG00013030
TU51470 other upstream 1854026 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2005287 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 2347924 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 2851240 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 2954847 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 1538879 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 3782993 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 3884161 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 3939978 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 3998225 21484907 ~ 21486808 (+) False G42344

Expression Profile