RNA id: TU52011


Basic Information

Item Value
RNA id TU52011
length 349
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G41744
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18003948 ~ 18018513 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAACAGCATTCATATCAAACCAATTCCAAGGCAGCCTGAAAAAAACCCTCCACCTGACAGCAAggcagacacagagaggacagcgTCTTTATCACAATGGCTCTCCAAAAGATCTTTGGAATTGTAATTCTGGTCTGCCTCACTCTGGTTTCTGGTGCCAAGGAAATCCCGAGGGtggtgaaTGTATTCGCTATGAATGAGGTCGACAACATGAACCTCCTTCAGGACATAACTGGTCTACTTGGTGGAGACAAATCTGACGAAGAGACTGGAACAACTCCCCAGCCCGGTAAGATCCAACTGTTTCACTTTCACTCTTACCGGCACAGGATTCAAACCTACTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52002 lncRNA upstream 18639 17921170 ~ 17985309 (+) False G41740
TU52003 lncRNA upstream 18639 17959726 ~ 17985309 (+) True G41740
TU51918 lncRNA upstream 426192 17577445 ~ 17577756 (+) True G41683
TU51876 lncRNA upstream 517266 17484653 ~ 17486682 (+) False G41649
TU51877 lncRNA upstream 517366 17484653 ~ 17486582 (+) False G41649
TU52085 lncRNA downstream 187752 18193251 ~ 18195132 (+) True AMCG00013047
TU52097 lncRNA downstream 234493 18239992 ~ 18240369 (+) True G41810
TU52100 lncRNA downstream 234969 18240468 ~ 18242583 (+) True G41812
TU52102 lncRNA downstream 234969 18240468 ~ 18242548 (+) False G41812
TU52101 lncRNA downstream 234998 18240497 ~ 18242583 (+) False G41812
AMCG00013041 mRNA upstream 114181 17866214 ~ 17889767 (+) True AMCG00013041
AMCG00013040 mRNA upstream 151052 17848756 ~ 17852896 (+) True AMCG00013040
AMCG00013035 mRNA upstream 315308 17657119 ~ 17688640 (+) True AMCG00013035
AMCG00013030 mRNA upstream 365252 17601378 ~ 17638696 (+) True AMCG00013030
AMCG00013033 mRNA upstream 412247 17583125 ~ 17591701 (+) True AMCG00013033
AMCG00013045 mRNA downstream 145953 18151452 ~ 18154122 (+) True AMCG00013045
AMCG00013047 mRNA downstream 153343 18158842 ~ 18230238 (+) False AMCG00013047
AMCG00013046 mRNA downstream 249946 18255445 ~ 18258332 (+) True AMCG00013046
AMCG00013053 mRNA downstream 260769 18266268 ~ 18280801 (+) True AMCG00013053
AMCG00013052 mRNA downstream 327226 18332725 ~ 18351553 (+) True AMCG00013052
TU51470 other upstream 2373321 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2524582 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 2867219 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3370535 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3474142 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 1020062 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 3264176 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 3365344 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 3421161 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 3479408 21484907 ~ 21486808 (+) False G42344

Expression Profile