RNA id: TU52091


Basic Information

Item Value
RNA id TU52091
length 868
RNA type TUCP
GC content 0.44
exon number 2
gene id G41807
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18176061 ~ 18191522 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attgttaattattaaagaGTTATGGTAGCAACGGTGTTTCCCTCCTCCGACTGGGCGTTTATCTCACGTCGGAGCAAAGGTGACCTCGCCTCTTGAGTAGTCAGTGTTATCTAAACCTACTGATCCTACTGATATCTAAGCCCCGCTGATCATTGACATTTTGCTGtcgttttttatattttaatgatggATCTGTCCTTAAAGAAACTTTTCTTCCTCGTCGTGGTGGGAACAATGTCCTGCATTTTCTGCTATGGCTTCTTCTCCACAGAGCCGGTGCTTAAGATCATTAGGGACCGAGTTTCCCTGACTTGGTCAGCAGTTTCTTCCACAGAAAAGACAGGTGAACCAGCTCCTGTTATAAAGAACCAGGATGCTGCACAGAAAGGCCAGGAACACAAGCAGGACACACAGCCTGGCATGTTGTCACAAGCAAATGAGAAGCCCAATCATGGTCCTAATGCAAAGCTCCAAGATAACCCTCCTAAAGTGGTAACAACTTTAACTGCAAAGGACAAACCAAGTACACCAGCAAAGCCCAAACCTAAAACAACCAAAGCCTCTACTGCCTCTCCTAGGACCACCAAAGCCAAAACCACTAAAGCTGCCACAACAAcaaattccaaaaataaaccaaaaacaactgcaaacaCCATTCAGAAAGTGCTTCCTGTGCTCGTGACCCCTACACTTGTGCCGCCCATGAATAAAAATGACTTTAAGAAGATGCCAGAATGGGATTTTGAGGATATCTACCTTAGGGAACCCCAGCCAAGACAGACGGTGAGAAACCTCCcttcaatttttaaaattacacaactgtactcCATGATGGAGACAGGCACACTGCTACTTGTGCTATGTGATT

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52051 lncRNA downstream 119349 17970304 ~ 18056712 (-) False G41772
TU52053 lncRNA downstream 119349 17971380 ~ 18056712 (-) False G41772
TU52056 lncRNA downstream 162391 17929898 ~ 18013670 (-) False AMCG00013042
TU52050 lncRNA downstream 201750 17971380 ~ 17974311 (-) True G41772
TU52054 lncRNA downstream 259122 17916500 ~ 17916939 (-) True G41773
TU52098 lncRNA upstream 48443 18239965 ~ 18240369 (-) True G41811
TU52104 lncRNA upstream 48946 18240468 ~ 18242535 (-) True G41813
TU52135 lncRNA upstream 66567 18258089 ~ 18258315 (-) False AMCG00013051
TU52136 lncRNA upstream 67605 18259127 ~ 18259406 (-) True G41839
TU52148 lncRNA upstream 88038 18279560 ~ 18282630 (-) True G41848
AMCG00013044 mRNA downstream 26883 18139575 ~ 18149178 (-) True AMCG00013044
AMCG00013043 mRNA downstream 67665 18089693 ~ 18108396 (-) True AMCG00013043
AMCG00013042 mRNA downstream 129347 18013657 ~ 18046714 (-) True AMCG00013042
AMCG00013039 mRNA downstream 261535 17914090 ~ 17914526 (-) True AMCG00013039
AMCG00013038 mRNA downstream 266732 17880229 ~ 17909329 (-) False AMCG00013038
AMCG00013049 mRNA upstream 2490 18194012 ~ 18239155 (-) True AMCG00013049
AMCG00013048 mRNA upstream 52673 18244195 ~ 18255349 (-) True AMCG00013048
AMCG00013051 mRNA upstream 66606 18258128 ~ 18264843 (-) True AMCG00013051
AMCG00013050 mRNA upstream 73617 18265139 ~ 18265498 (-) True AMCG00013050
AMCG00013055 mRNA upstream 100648 18292170 ~ 18293312 (-) True AMCG00013055
TU52041 other downstream 132474 17954063 ~ 18043587 (-) False AMCG00013042
TU52042 other downstream 276635 17880225 ~ 17899426 (-) False AMCG00013038
TU50830 other downstream 5060574 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 5922618 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 9062985 9112441 ~ 9113076 (-) False AMCG00012829
TU52133 other upstream 51228 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 785538 18977060 ~ 18998766 (-) True AMCG00013071
TU52316 other upstream 785538 18977060 ~ 19022778 (-) False AMCG00013071
TU52331 other upstream 876723 19068245 ~ 19071418 (-) True AMCG00013070
TU52412 other upstream 1788814 19980336 ~ 19982880 (-) True G42076

Expression Profile