RNA id: TU52100


Basic Information

Item Value
RNA id TU52100
length 2116
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G41812
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18240468 ~ 18242583 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaatacaaaatatttattttgaacatacCTGCCCCTGTCATTTGTAGTAGTATTTGTTATCAGTTCTCTCAAAAAAAATGAGTACATGTTTAGAGAATATTGCTTTAACTCAATCGGCATCATAGAAAtcagtttgacttttttttttttttaatttcccctctCTCCATACCGCTTCTTTAAGGAGGAATTTCCACAGGTTCAACATCAAACAGGCACTTATTTCCAAAGGGGAGAGGCAGAACTTTTAACCAGAACACACAATTCTACATGGGACAAACtgtcagtgttttctttgttatacagtatttaacaaAGTAATAAATGCTCTTAAAAGTCATCAAATCATAGTGAAGAGTAAAACATTTAACCCCACCATCCTAGAAGAAAGTTAaattttctttaacatttcaGATTTGGCTATATTAGGTGAGAAGAGTGCTGAACTGAAAAAGCAAACTACTCTGAAGCCTGGGAAATGACACTGTGCATTTTCATTCAGGAGTAATAAATAAAGGGTCAAGACTGGTGAAAAAGGTAAATTCACTTTAAATAGATCAGAGTTTAcatcatacaaaacaaacaaacaaaccaacaaacaatcGAGAAATGcatcaaatgtttttcactgataataaaataggcagactggtttaattaattgttttctagCAGAATTAGTTCCTTTTTGGAATACTTAGAATTTCATTAGACAATACTTCCCTCTTATCACTCATTAAACCCTATACCAACAAGTGAATGTGCAGCTCAAATtccagaaaggaagaaaaaaattataaatcaggGATAAAGAAACCTAATTGGGTGTGCTGCAGGTCCTCATTATAGCATAATTTCAAATCATTTAATAAGTATTTACTCAGACTGATTTCCGAACAGTCATGTTAAggttcgatttttttttttgattcagctaataaacacacaacatttCTTGAAAGGAACTATTCCTTTTTGATATGCAGAGTAAGCAAACATTATTGTTAAGGGTTGTGACTGAAGTTAAGAGCTGACAGATTCTGCAATGCAAAGAGATTACAGCTCTCAAAAAACTGAGAGATAAGTTCAGGAATAAACACACTTCTATGTATCCCTCCTTTTCCAGAAAGAACATTAAACGAATGTGGGCTCTTACAAATGTATCACATGATTACATGATCCACCTTCAgacttttattctttatgcGAACTGAATACGATCAAGGAATGTCACATTTTACCCTGTGTGTGAGGTAATTCCACCATTATAAAATCTGTTGCGTGGGGAAGGATCTTTTCAGAAcgattattaaaaaataataaaaattacagTTCAACTTTAACTGTGCTAGACAAAGGATTGCATGCCTTTGTGCTTCTTGTCCTTTTAGCAAAATTCAACAGTATTTATGAAGTCATACTTGAATATGCATAAGTATACTTGTAGATTAAGGGCAAAGACTCTCTCATTCTTTGCAAAGGCTGAGAAAACTTGTGTCCTTAGTGACAGATGGAATATTGTCCTGATATTGTTCCCAGCCTCAGGCAAGTCAAGGTACTTCAATACATTCCTCACACATTGCTCCCAAGCACAAGGATGCCAAAACATCTTATCAAATAATTCAAGGTCTTTACTTTGTGATGTTGTGAGTGAGTCTAGCAAGTATCTCTAAAATGGTGGATTCTACACATTATGTTCATGATGTTGCTACATCTTTTACAGTTGATAAGAATACTAAACCACTTGCAGTGCACTATACTACACAGATGCCATCCAATGCCGTAATGGGGCTAACCAAAAATATATGCAAGTCACAAGAGTTCTCTCTCAATGTTAAGTATTCATTTCCTCAAGACAGTTCTGATTTTTGCCTTCAAAAGTTActtaatgaacacaaacaaaaaatatatttaaattatgaaatgtgAAACTTTAAGATGTGAGGGGGGAAGTATACAAATGTATGGTTTATGGCTAATAGTGCAGCACAACTACATAGAAAGCATCTGCATTCACTTTCCTTTAAGTGTTCTAGTCCTTGATTTAGACAAAATCCTGGCTTGAAACTGGAAACCTTTTCTGCAAACCGATTTTTACAGACCACTAAagacgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52097 lncRNA upstream 99 18239992 ~ 18240369 (+) True G41810
TU52085 lncRNA upstream 45336 18193251 ~ 18195132 (+) True AMCG00013047
TU52012 lncRNA upstream 221955 18003948 ~ 18018513 (+) True G41744
TU52009 lncRNA upstream 226790 17929935 ~ 18013678 (+) True G41743
TU52107 lncRNA downstream 200 18242783 ~ 18244143 (+) True G41814
TU52112 lncRNA downstream 19380 18261963 ~ 18265695 (+) True G41818
TU52115 lncRNA downstream 41045 18283628 ~ 18284855 (+) True G41821
TU52116 lncRNA downstream 53062 18295645 ~ 18295946 (+) True G41822
TU52117 lncRNA downstream 56042 18298625 ~ 18298914 (+) True G41823
AMCG00013047 mRNA upstream 10230 18158842 ~ 18230238 (+) False AMCG00013047
AMCG00013045 mRNA upstream 86346 18151452 ~ 18154122 (+) True AMCG00013045
AMCG00013041 mRNA upstream 350701 17866214 ~ 17889767 (+) True AMCG00013041
AMCG00013040 mRNA upstream 387572 17848756 ~ 17852896 (+) True AMCG00013040
AMCG00013035 mRNA upstream 551828 17657119 ~ 17688640 (+) True AMCG00013035
AMCG00013046 mRNA downstream 12862 18255445 ~ 18258332 (+) True AMCG00013046
AMCG00013053 mRNA downstream 23685 18266268 ~ 18280801 (+) True AMCG00013053
AMCG00013052 mRNA downstream 90142 18332725 ~ 18351553 (+) True AMCG00013052
AMCG00013054 mRNA downstream 116972 18359555 ~ 18362887 (+) True AMCG00013054
AMCG00013057 mRNA downstream 146228 18388811 ~ 18396122 (+) True AMCG00013057
TU51470 other upstream 2609841 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2761102 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3103739 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3607055 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3710662 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 782978 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 3027092 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 3128260 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 3184077 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 3242324 21484907 ~ 21486808 (+) False G42344

Expression Profile