RNA id: TU52104


Basic Information

Item Value
RNA id TU52104
length 2068
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G41813
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18240468 ~ 18242535 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCAAGCCAGGATTTTGTCTAAATCAAGGACTAGAACACTTAAAGGAAAGTGAATGCAGATGCTTTCTATGTAGTTGTGCTGCACTATTAGCCATAAACCATACATTTGTATACTTCCCCCCTCACATCTTAAAGTTTcacatttcataatttaaatatattttttgtttgtgttcattaagTAACTTTTGAAGGCAAAAATCAGAACTGTCTTGAGGAAATGAATACTTAACATTGAGAGAGAACTCTTGTGACTTGCATATATTTTTGGTTAGCCCCATTACGGCATTGGATGGCATCTGTGTAGTATAGTGCACTGCAAGTGGTTTAGTATTCTTATCAACTGTAAAAGATGTAGCAACATCATGAACATAATGTGTAGAATCCACCATTTTAGAGATACTTGCTAGACTCACTCACAACATCACAAAGTAAAGACCTTGAATTATTTGATAAGATGTTTTGGCATCCTTGTGCTTGGGAGCAATGTGTGAGGAATGTATTGAAGTACCTTGACTTGCCTGAGGCTGGGAACAATATCAGGACAATATTCCATCTGTCACTAAGGACACAAGTTTTCTCAGCCTTTGCAAAGAATGAGAGAGTCTTTGCCCTTAATCTACAAGTATACTTATGCATATTCAAGTATGACTTCATAAATACTGTTGAATTTTGCTAAAAGGACAAGAAGCACAAAGGCATGCAATCCTTTGTCTAGCACAGTTAAAGTTGAActgtaatttttattattttttaataatcgTTCTGAAAAGATCCTTCCCCACGCAACAGATTTTATAATGGTGGAATTACCTCACACACAGGGTAAAATGTGACATTCCTTGATCGTATTCAGTTCgcataaagaataaaagtcTGAAGGTGGATCATGTAATCATGTGATACATTTGTAAGAGCCCACATTCGTTTAATGTTCTTTCTGGAAAAGGAGGGATACATAGAAGTGTGTTTATTCCTGAACTTATCTCTCAGTTTTTTGAGAGCTGTAATCTCTTTGCATTGCAGAATCTGTCAGCTCTTAACTTCAGTCACAACCCTTAACAATAATGTTTGCTTACTCTGCATATCAAAAAGGAATAGTTCCTTTCAAGaaatgttgtgtgtttattagctgaatcaaaaaaaaaaatcgaaccTTAACATGACTGTTCGGAAATCAGTCTGAGTAAATACTTATTAAATGATTTGAAATTATGCTATAATGAGGACCTGCAGCACACCCAATTAGGTTTCTTTATCcctgatttataatttttttcttcctttctggaATTTGAGCTGCACATTCACTTGTTGGTATAGGGTTTAATGAGTGATAAGAGGGAAGTATTGTCTAATGAAATTCTAAGTATTCCAAAAAGGAACTAATTCTGctagaaaacaattaattaaaccagtctgcctattttattatcagtgaaaaacatttgatgCATTTCTCgattgtttgttggtttgtttgtttgttttgtatgatgTAAACTCTGATCTATTTAAAGTGAATTTACCTTTTTCACCAGTCTTGACCCTTTATTTATTACTCCTGAATGAAAATGCACAGTGTCATTTCCCAGGCTTCAGAGTAGTTTGCTTTTTCAGTTCAGCACTCTTCTCACCTAATATAGCCAAATCtgaaatgttaaagaaaattTAACTTTCTTCTAGGATGGTGGGGTTAAATGTTTTACTCTTCACTATGATTTGATGACTTTTAAGAGCATTTATTACTttgttaaatactgtataacaaagaaaacactgacaGTTTGTCCCATGTAGAATTGTGTGTTCTGGTTAAAAGTTCTGCCTCTCCCCTTTGGAAATAAGTGCCTGTTTGATGTTGAACCTGTGGAAATTCCTCCTTAAAGAAGCGGTATGGAGagaggggaaattaaaaaaaaaaaaaagtcaaactgaTTTCTATGATGCCGATTGAGTTAAAGCAATATTCTCTAAACATGTACTCATTTTTTTTGAGAGAACTGATAACAAATACTACTACAAATGACAGGGGCAGgtatgttcaaaataaatattttgtattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52098 lncRNA downstream 99 18239965 ~ 18240369 (-) True G41811
TU52051 lncRNA downstream 183756 17970304 ~ 18056712 (-) False G41772
TU52053 lncRNA downstream 183756 17971380 ~ 18056712 (-) False G41772
TU52056 lncRNA downstream 226798 17929898 ~ 18013670 (-) False AMCG00013042
TU52050 lncRNA downstream 266157 17971380 ~ 17974311 (-) True G41772
TU52135 lncRNA upstream 15554 18258089 ~ 18258315 (-) False AMCG00013051
TU52136 lncRNA upstream 16592 18259127 ~ 18259406 (-) True G41839
TU52148 lncRNA upstream 37025 18279560 ~ 18282630 (-) True G41848
TU52149 lncRNA upstream 41093 18283628 ~ 18284531 (-) True G41849
TU52150 lncRNA upstream 43016 18285551 ~ 18285996 (-) True G41850
AMCG00013049 mRNA downstream 1313 18194012 ~ 18239155 (-) True AMCG00013049
AMCG00013044 mRNA downstream 91290 18139575 ~ 18149178 (-) True AMCG00013044
AMCG00013043 mRNA downstream 132072 18089693 ~ 18108396 (-) True AMCG00013043
AMCG00013042 mRNA downstream 193754 18013657 ~ 18046714 (-) True AMCG00013042
AMCG00013039 mRNA downstream 325942 17914090 ~ 17914526 (-) True AMCG00013039
AMCG00013048 mRNA upstream 1660 18244195 ~ 18255349 (-) True AMCG00013048
AMCG00013051 mRNA upstream 15593 18258128 ~ 18264843 (-) True AMCG00013051
AMCG00013050 mRNA upstream 22604 18265139 ~ 18265498 (-) True AMCG00013050
AMCG00013055 mRNA upstream 49635 18292170 ~ 18293312 (-) True AMCG00013055
AMCG00013063 mRNA upstream 316413 18558948 ~ 18564943 (-) True AMCG00013063
TU52091 other downstream 48946 18176061 ~ 18191522 (-) True G41807
TU52041 other downstream 196881 17954063 ~ 18043587 (-) False AMCG00013042
TU52042 other downstream 341042 17880225 ~ 17899426 (-) False AMCG00013038
TU50830 other downstream 5124981 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 5987025 12240396 ~ 12253443 (-) True AMCG00012888
TU52133 other upstream 215 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 734525 18977060 ~ 18998766 (-) True AMCG00013071
TU52316 other upstream 734525 18977060 ~ 19022778 (-) False AMCG00013071
TU52331 other upstream 825710 19068245 ~ 19071418 (-) True AMCG00013070
TU52412 other upstream 1737801 19980336 ~ 19982880 (-) True G42076

Expression Profile