RNA id: TU52107


Basic Information

Item Value
RNA id TU52107
length 1361
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G41814
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18242783 ~ 18244143 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGAAAACGTGACTTAATTCAGTCATGATCTGCACATCAACCAGTCACACCTGGGTAAAGAAGTCCACAGTTTTGGTTATTCGTATAGGAAAAGGGTTTGGCTTAAGAACTGATTTTCAGATGTGGACCAGTGTGCCTGCTGCCCTCCTGTGTAGTCAGCACTGATAACTCTGCATATTCAGTATGGTTACACACAAGCTTGTGTTCCCAAATTAATCATCATTActcagcattttaaatatgcattacaGTATTGGGAATAGAATCCCCAGTCTTCTTAATTTTAGTATTCTGAATAAAATGAGGAATGTTAAGATAGCTTTGAATCAGCAAATGAAACTAGGTTAAATTAACACCTGGCTACGAGTGGGGGTGGTGTGAACTTGTCTTTCCAACGTGATTGGCCAAAGACATCACGAACAGGTGCTCCAGATCTTCGAACCctgtaattaattcagttttgaatGACCTTTCACTTTCACATATACAGTATTGCAACTGGAAACGGAATACAATTACTACTATTGAGgcatgcatttgtattgtatagcTGGCTACAACTCTTCTAtgatacaaaactgaaatccaCCAGTTGAGATTTTTGTAACCATACCATCTCATGCATCTTAAGTGACTTTTACTTAACAATAAACTTGCATTGTGTGGCCAGAATGAGACTGGGGCAACTGTAATGTCCAACAAACATGAAGAATGTTCCCAATATGTCCCACTATAATGTATACAAGAATCACATGTGTATTCTTGTATACACATACTTCAGAATACTTATTTAGAATACTCATATCCAGAAAACTGAGGAATTCCAAATGTGCTTTGAATGGAAATGCAGGAGGATAACTGTGGACAGACGGTTGGCATTACATTGCCAAATCACCAGTGCTTTATCTGCTCAGAGGACAAGCAAACTGAATGGATGGCAGCAGTTTAGTTCAGTTACATATGAAGAAAATGTTCCAGGTCTCTGCAAAAAATATTTAGGTTCAAGCTTGCAGGATGTCTACAGAgttggtattttaaaattgctGACAATTTAGACTTAACCACTCCAAGTGCATTcaagaaaaatgctttgaaaatatttaaaaaagccaacaaacaaaaatgatatgCAAAGCAAACACTTGAAGAGAAAACTCATTGCTTGTTTATCAGCTACAATTGCATCCCTCCCTTCCAAAAAGTCATTCACAGAATTACTGATCCATCTGTAATTTTTCAATTTGCAGAGTAACTTGGCAAGTTCTGCATGGGGGCAAACCTTGCTAAATCATCCCATTTCAAATAATTGCCTaaaccaggggttttcaaaccggtcctggagtacaccctgccctgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52100 lncRNA upstream 200 18240468 ~ 18242583 (+) True G41812
TU52101 lncRNA upstream 200 18240497 ~ 18242583 (+) False G41812
TU52102 lncRNA upstream 235 18240468 ~ 18242548 (+) False G41812
TU52097 lncRNA upstream 2414 18239992 ~ 18240369 (+) True G41810
TU52085 lncRNA upstream 47651 18193251 ~ 18195132 (+) True AMCG00013047
TU52112 lncRNA downstream 17820 18261963 ~ 18265695 (+) True G41818
TU52115 lncRNA downstream 39485 18283628 ~ 18284855 (+) True G41821
TU52116 lncRNA downstream 51502 18295645 ~ 18295946 (+) True G41822
TU52117 lncRNA downstream 54482 18298625 ~ 18298914 (+) True G41823
TU52226 lncRNA downstream 416111 18660254 ~ 18660522 (+) True G41908
AMCG00013047 mRNA upstream 12545 18158842 ~ 18230238 (+) False AMCG00013047
AMCG00013045 mRNA upstream 88661 18151452 ~ 18154122 (+) True AMCG00013045
AMCG00013041 mRNA upstream 353016 17866214 ~ 17889767 (+) True AMCG00013041
AMCG00013040 mRNA upstream 389887 17848756 ~ 17852896 (+) True AMCG00013040
AMCG00013035 mRNA upstream 554143 17657119 ~ 17688640 (+) True AMCG00013035
AMCG00013046 mRNA downstream 11302 18255445 ~ 18258332 (+) True AMCG00013046
AMCG00013053 mRNA downstream 22125 18266268 ~ 18280801 (+) True AMCG00013053
AMCG00013052 mRNA downstream 88582 18332725 ~ 18351553 (+) True AMCG00013052
AMCG00013054 mRNA downstream 115412 18359555 ~ 18362887 (+) True AMCG00013054
AMCG00013057 mRNA downstream 144668 18388811 ~ 18396122 (+) True AMCG00013057
TU51470 other upstream 2612156 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2763417 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3106054 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3609370 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3712977 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 781418 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 3025532 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 3126700 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 3182517 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 3240764 21484907 ~ 21486808 (+) False G42344

Expression Profile