RNA id: TU52112


Basic Information

Item Value
RNA id TU52112
length 3309
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G41818
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18261963 ~ 18265695 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaactttaatagcATTCACATAACAGTGGTTATAAGTACAGAATGTTTAAAGCGAAAGAATTGCAAAGGAATGCACCAAGAGCGATCTACAGAATGCAATTACATTCTCAGTTTAACAGAAGTTACAATTACTGAAAACCCATAAGGTGTGTATAAGAACGGCAAGATGTGCTCACTGTATGctccaattaaaaaagaaaaagaaaaacatgtaattgtgtGGCCTTCATGTCAGGAAATGCAGCAGACCGGcattttacaaaaggaaaatctGCGGCAGCCATTTTATGCATCGGCACGCCAAGGCATCGTTACACAGGAGCAATCAGGAGAAAACTGGAAACAGCCAAGCACTCTGCACTGCAACACGCCACCTTAACAGCTAACCAGCAATACTCAACTGCTACACAACTGCGCCTAGtgcacaaaaaatacacaagagAAAAGATTAGAATCACAATAAGATGAAACtgtcatttacaaaaaaaaaacttgcaagtaaatgaaaacaaaatcagtgcTGGGTCagcctttttaaatgttagcTTAACAGGGCTAATCGTAAATTTAAActggttttattaaaaaaaaaaaaaaaaaaaaaaaaagttagtcaAGCACTTGTTCCAGATTACTAGTcctttattgcatttaatttaaattctgccCTAAAATACCCTGCCGAGTTTAGCACATTTCATTTCTGTATATGAACCAATTGAAATTTTGCAATGTCAAAACTTGCAATTTCCAGACCATTTTATATACTCTGGGCTATACTTCCAATTATAGTTTGATAAATCCCCCAAAATTGTAGGTGAaaattttacaaagaaaaaattcTATACaaaatggaggaaaacaaaaccctcAGCACCACATCatgttaaaacagaaaaacaatttgCTTTACCTCACTTACACAAGCCCATAAAGTATCTGAAGTTCTTCCTATTCAATGAATTACAAGAAATTGGAAAAGatggcacaaaataaaaatcagcctTATTTTCTAGGCAActtaaatcaaaagaaaagcatttaaaaacctTGGGACTAAGTTACAATAATAACCTTTTAGCCAGCAAATTTCTcttgtgggggggaggggggggtgtgtgtgtgtggtcctCAGTCTTTGAGGCCTATACTTTCGACGGGGTGTCCTCAGTTGGGTCTGTCACTCATCTGAAAAATctagagagtgagagagagaagagcgTGAGCAAAAGACAACAGCAATAGAAAAGCCTCCAGCTAAGCTACCTTTATTTTGATGCATTAAAAGTTACTAATGTACAATATACAAGTTAAAATGCTCTTAGGGCCCAAGATACATTGACAAAAAGAGGCAAAAGACTGAAAGCTTGAATTACCTCCATGTGCACAAATGAGCGATTAGTCATGCCACATGTGGTATAAACTACATCTAACTGGGATTTCCTGCAAAATGCATTAATGACAATTGTCATGGTGTCAAACTGTCACAAGCAATCCTACATTTGTAGGATAGATGACGAGGGCAGTCTTAAAAGACAGGATTTGTAGCTCCTTATGTAATCTCCTTTATGGGGAGTTACATGAAGAGCTTGCCATTGGAAAGAGCATGGGGGTTGATATAACAGCTAAATTAGTTTGAAGAAGTCCTAGTGCTACCTTTAAGGCACACAAGAACTCTTCATTTGACCTATTATTCATCCCTGACATGAACAAGTAGGCAGACAAaccttttttctctcctgcttTATTCTGTGAGCCCACAGTCATGAGCGCATGACCTGGAGGACAATGCAAGGCTTCTGTCCATTGTCCTGCAGACGTACCTCAACACCACCTCATTACTGACTGTGACCGACCTGCTCCAAAGCATACCCCAACAGCAGGAGGCGGCCCCTGGGCGGATCACACAACCTCTAACTGCACAAACTGCCCCAAACTCCTTTTTTGCAAACAGGAAACAGCAGCTTGGAGGAGAAAATTCCACATTTTTGGTGAATATTTTACTTCCGAACCAGTCTTTATACTGCAAAATATCACTCCTGCAATTAACaatttccccctccccccactagTCTTCTGAAATGGAACACTTTCAAACCTCAAATTTACATCAGACCTGATGTAAATTCCATTATATCCCAAagtctaatttaaaaacactaaagTTGCTATAATCAGCTTTTCTCCAACCTGTTGCTCACTGGGCAAACAGCCATCCGATCAACCCTGCATCAATCTCGGGAGGAAACAAACGGCCCGATTCCACAAGTTACTTGTCAGTTCAATTTCCGTTGCGTAACTATGAAAAATACTTGAGTGCAAAAGGTTGGAGAGGTTTGCTGCAAGTTGTGACTGTCAGTCATgcttaaaacattaaagttttGCCAATGCTACGCCCTTTCATCATGCTACTTACTGAGCGTGGAACATTTGTTAATGCTGATCCTTCACTATAATTAAAACTCAAACATCCCCTCCTGGCTGTGCCGGCGGGAGTCCCGCAGCAGTATTTACCGTGCATTCACGAAGACACCGCGCCTTCCTCCTCCGGGGACTTGGGGAGACTCTTCGACCTCGATCTGGACTTGGACTCTCTGTTGGAGGGCGGCGTGCGGCTTCTGGACCGGGAGCGGGACTTCGACCTGGAGCGGGACCTGGACACAGACTTGGACTTGCTCCTTCTGGGGGTCCTGGACTTGGAACGGGAGCGGGACCGGGAGTAGGAGCGGGACCTCGACCTGCTGTAGCGGGAACGGCTGCGGGACCTGGATCGGCTCCGGCTCCTAGAGCGGCTGCGTCGTCGTCGTCGAGGACTCCGGGGGACGCCCGTAGCGGGCCATCTGCACCCTCAGTTCCCGCCCGTCCAGCACAGCTCCGTCCATGGCATCCATCGCGTCTTCGGCATCCCGCTTGTCGTGGAAGCGAACAAAGGCGAACCCTCGGCTCTCCTTCGTGTACCGGTCACGGGGGATGTACACGTCTCCGACGCGGCCGTACTTCTCGAAGACCCTCCGCAGCGTCTCTGGCGATGTCCGATAAGTCAAGTTGTCCACTTTGAGTGAAGTCATGCCCTCAACATCGGGTGGCGGCCTACCGTAACTCATTTTCTCGTCAGACGGTgtaaaccaaacaaagaaaaaataaaacttcaacTATCAGTAAATCTCagaatgtttaattaatctaCTAAGCAATCCCTTCACTCTagttacttaatttaaattttaattacatacacAGTATAACATTCTAAATGCACGCTGCGCACAAATCAACAATGCAGCACACGGCTGCCTCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52107 lncRNA upstream 17820 18242783 ~ 18244143 (+) True G41814
TU52100 lncRNA upstream 19380 18240468 ~ 18242583 (+) True G41812
TU52101 lncRNA upstream 19380 18240497 ~ 18242583 (+) False G41812
TU52102 lncRNA upstream 19415 18240468 ~ 18242548 (+) False G41812
TU52097 lncRNA upstream 21594 18239992 ~ 18240369 (+) True G41810
TU52115 lncRNA downstream 17933 18283628 ~ 18284855 (+) True G41821
TU52116 lncRNA downstream 29950 18295645 ~ 18295946 (+) True G41822
TU52117 lncRNA downstream 32930 18298625 ~ 18298914 (+) True G41823
TU52226 lncRNA downstream 394559 18660254 ~ 18660522 (+) True G41908
TU52244 lncRNA downstream 431125 18696820 ~ 18697632 (+) True G41924
AMCG00013046 mRNA upstream 3631 18255445 ~ 18258332 (+) True AMCG00013046
AMCG00013047 mRNA upstream 31725 18158842 ~ 18230238 (+) False AMCG00013047
AMCG00013045 mRNA upstream 107841 18151452 ~ 18154122 (+) True AMCG00013045
AMCG00013041 mRNA upstream 372196 17866214 ~ 17889767 (+) True AMCG00013041
AMCG00013040 mRNA upstream 409067 17848756 ~ 17852896 (+) True AMCG00013040
AMCG00013053 mRNA downstream 573 18266268 ~ 18280801 (+) True AMCG00013053
AMCG00013052 mRNA downstream 67030 18332725 ~ 18351553 (+) True AMCG00013052
AMCG00013054 mRNA downstream 93860 18359555 ~ 18362887 (+) True AMCG00013054
AMCG00013057 mRNA downstream 123116 18388811 ~ 18396122 (+) True AMCG00013057
AMCG00013056 mRNA downstream 141016 18406711 ~ 18433678 (+) True AMCG00013056
TU51470 other upstream 2631336 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2782597 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3125234 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3628550 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3732157 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 759866 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 3003980 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 3105148 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 3160965 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 3219212 21484907 ~ 21486808 (+) False G42344

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010437 False 1776 mRNA 0.46 3 NC_007123.7 31720673 ~ 31724387 (-)
grasscarp (Ctenopharyngodon idella) TU302660 True 3003 lncRNA 0.43 2 CI01000063 7511936 ~ 7515695 (-)
grasscarp (Ctenopharyngodon idella) TU332002 True 282 lncRNA 0.32 1 CI01000080 3173977 ~ 3174258 (-)
mexican tetra (Astyanax mexicanus) TU332002 False 1415 lncRNA 0.40 2 NW_019171182.1 141310 ~ 145508 (-)