RNA id: TU52136


Basic Information

Item Value
RNA id TU52136
length 280
lncRNA type intronic
GC content 0.40
exon number 1
gene id G41839
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18259127 ~ 18259406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGAAAGTTTTATAATGTGTTATACTAATATCACAAGGGTCTGACAGGAGTCGTGGACAGAATGCCATTGAGATCTTCTTTTGCTTTCCCTGCAGAATTGAGATCTGCATACTGGAGCTTACTAGCAATTGCAGTATTTGGCAAAATAATGTGTGTAGacagtttctgtctgtgtcttacATCAATACTCACCTTCTCTCCTGGTAGGTTGTCCAGAATTGTACTTGAGGGTTTTTCCTCAGGAAGAAGGAGATGGTCACAAGGATATCTTCAAAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52135 lncRNA downstream 812 18258089 ~ 18258315 (-) False AMCG00013051
TU52104 lncRNA downstream 16592 18240468 ~ 18242535 (-) True G41813
TU52098 lncRNA downstream 18758 18239965 ~ 18240369 (-) True G41811
TU52051 lncRNA downstream 202415 17970304 ~ 18056712 (-) False G41772
TU52148 lncRNA upstream 20154 18279560 ~ 18282630 (-) True G41848
TU52149 lncRNA upstream 24222 18283628 ~ 18284531 (-) True G41849
TU52150 lncRNA upstream 26145 18285551 ~ 18285996 (-) True G41850
TU52151 lncRNA upstream 36239 18295645 ~ 18295946 (-) True G41851
TU52161 lncRNA upstream 72404 18331810 ~ 18386206 (-) False G41858
AMCG00013048 mRNA downstream 3778 18244195 ~ 18255349 (-) True AMCG00013048
AMCG00013049 mRNA downstream 19972 18194012 ~ 18239155 (-) True AMCG00013049
AMCG00013044 mRNA downstream 109949 18139575 ~ 18149178 (-) True AMCG00013044
AMCG00013043 mRNA downstream 150731 18089693 ~ 18108396 (-) True AMCG00013043
AMCG00013042 mRNA downstream 212413 18013657 ~ 18046714 (-) True AMCG00013042
AMCG00013050 mRNA upstream 5733 18265139 ~ 18265498 (-) True AMCG00013050
AMCG00013055 mRNA upstream 32764 18292170 ~ 18293312 (-) True AMCG00013055
AMCG00013063 mRNA upstream 299542 18558948 ~ 18564943 (-) True AMCG00013063
AMCG00013065 mRNA upstream 513219 18772625 ~ 18788291 (-) True AMCG00013065
AMCG00013066 mRNA upstream 545606 18805012 ~ 18820165 (-) True AMCG00013066
TU52133 other downstream 15034 18242750 ~ 18244093 (-) True G41836
TU52091 other downstream 67605 18176061 ~ 18191522 (-) True G41807
TU52041 other downstream 215540 17954063 ~ 18043587 (-) False AMCG00013042
TU52042 other downstream 359701 17880225 ~ 17899426 (-) False AMCG00013038
TU50830 other downstream 5143640 13114893 ~ 13115487 (-) True G40778
TU52315 other upstream 717654 18977060 ~ 18998766 (-) True AMCG00013071
TU52316 other upstream 717654 18977060 ~ 19022778 (-) False AMCG00013071
TU52331 other upstream 808839 19068245 ~ 19071418 (-) True AMCG00013070
TU52412 other upstream 1720930 19980336 ~ 19982880 (-) True G42076
TU52536 other upstream 2271788 20531194 ~ 20545811 (-) True AMCG00013090

Expression Profile