RNA id: TU52148


Basic Information

Item Value
RNA id TU52148
length 2993
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G41848
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18279560 ~ 18282630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNATAtatcataattgtcaatattttctgagattttgtattcctactcagaccaagaaTCCTccacccccatttcagaatgcggaagagaggtataaaaacaaaaatgttcacatcGTTGAAAGccgagagtctcagctttcacgggataccaaacacttggcaaacaacacaacaatgaaGAGTACACATGAGATTAAAGTACACGGATTTGATGCCCTTTTAAAAGGTACCAGATGGGCTtttcagcttaaggggttacattttgataaacaaaacaattccatgatttttttatctccaattgtttatttgttctatgctttaatttcagagtacattaagacattaaactgtgtaaatttaaataaaaactggaaaaattgagttgttctaaaacttttgacaggtAGTGTAGTTCTAAATTGAAGTGGCActtttctccctcccccccacacacacaatgaagGCATGTTAAAACCATGGGCATTAGCAAATAGCCATAGTAAAACTGTTAAAAGTGCAAAGATCATAATTTGGTACATTTTCCAAAGGAGATAAATGGCCACCAGTGTTTTCACCATCAAAACCCTCAATGGCTCAATTCAGAAGCAGCATTCGTTCAAAGTTCACATCCTtcatagttaaaataataatataaaaattcAACTATATTTCAGATCTGATCCAAGATACAACTAACAGCAAAAATAAGCAATCTGCTTTCATCTGTCAGACTAGCTGTCGATATTCCAAAGCTATATTACCCCTTTTTGACTTTTTGACATAAATCAATCATGCAGCAAAACTACACTTATCAAATTGTGAAGCTCTTCTGCTCACTGACAAATTCTTATTGAAATTGGCAACTTTATGCATCCCTTGAATTTATACTAAGCCATgacatcattttgttttcatcaaatGGGAGCACTAAAAGATATGAAAAAGCAGCACTTGGACCCATGAGAACAGAGACCAGCTTggatgacctctgacctctgccTTGGCTGTCCAGGGACTGGTCTGAATGGGAATGGAAGgggaggaggtggtggaggGATCTGTGAGTTTAGgcaattgaattaaaatagattttcctCATATTTACCATTTGGAATAACTGAGGCCTAAGATCCACAGCTACCTATCAAGATCAGACATTCAGAACAAGTAGAGTCTGGATTCTAGAATGAACGAATGTTACGGTTGTATTCTAACTTCCTAATGAATTAATCTGTGAATTTGGCTATATTGCTAGTGTTAGTCCACAGCAATTGCATCAGCTATTGGATAAATATAGAATTAATAGTGAGAGACACCAGTGACCATTCTGTTCTTGGCACATTCATCTTAAGTACAACTGACATTTAATCTCCCCAAAACTGAAAGACTGAATGTTTTTGGAGCCTTATAGAAAATcaatgatttttgttgttggtctGTGGATAAGCtttagataaaaaataaaacaatgaacagGAACAGCAGGTGTGATGATTACTAAGCAACTGTTCTTACATCCTATTGTGGTTTCCAACTGAAAACACAGTGAGCAGATGAAAATCatgaacactgaacactgaactgAACACTTGTAAACCCCCAAACTTGGGaataaaaccatgaaaacaaacaaataaaaatccctTCTCTTTTTCACTTTCGCAGTTCCCCTCCAACAACTGCTAAAATCTCAATTACCCGTATTGAGAACGTGCATCAAAACTGGCTCAGATTACATATGCGGATGAAAAGAACATCATCCAAGATTTTCATATGAATGATATagatgtgtatattatatatatatatatatatatatatatatcggttcCTCTATTTGGGTGTGCACGTTTCAAATGTGAGCCCAGAAATTTGAGAAATCTGTGAAATCGGTTTTCATTTACTGTACAAGCAGATGCGATGACAAATCAGTCTGTATTTACATGTTTGGAATCCAGTTTCATTCCCTTTCAGTTTTGCCTGTTTGGGTTTGATTCTGAGCTGGGTAGAATTGTGATAAAAGTTGACTACCTCCAGAACTAACATTCTCTAACGGCCTAGCAATTTCAGTCAAACAAGGAAACTGTAAATGATTTCGCTGTGAAAGCATGAAAGCGAATCAGTCACTTGGGCAAGATTTGACTCTGCGACcaaagtgaaacaaacaaacaaaacaaaaagaaaacaaccacatATTCCATCTTGACCCACTGTGAGTTAGTCTGTGATGCATGGACAAACTCTGGTTtggtgatttgtgtttttagtgAAGCTGATGTCTACTTTTAGGTAGCTCTGGGTTCCAGTGTGCGTTTTTGCTGGCCGTGTGTGCAAACAATTGCTAGGGGAACTTGGAAGGGTGAATGGCGGTGAGATGGTGGgaagggagaaggagggggggtTGGGGAACTCCACAACCCCGAGTGCTGTGTCAGTCATGAGCAGTGGGGACGCATGGGCGAACTCCCTGCCCACCCCTGGAACACTCAGTTAATGTTCTCCACTCCCAGCGAGCGGGGATCTCTGTGGCCACTCCCTCTAGTCAGATGCTGTCGTAGTCGGAGTCTCGCCTAATTGACACAGCCAGCCGTTCAGCCAGGAAGAAGTTCAGGGTCCCGAAGAAGCCTGTGATTACCATGATGAGGAGCTGCCACTGCAAGAGGAGGTAGTTGCTGTAGAAGAAGGCCACCGCCGCACTGATGGACTGCAAATACATCAAAACAGGCCTGCGTTTAGAACAGGGCAGCCAATGCCACCTTCCTTGGTGTATGATTCACCTACAGCCTGCAGATAACTTTCCCTAAATTACTATTTACACTTCAAAagcaataattttttttttaggtgggGAAAAGTAATTAACAGATAAATCTGATTTCAAGCCCAGGCTGAGGTAATTGCCTGCATTGTAGTTTTAGCAGAGATCCCCTATCcaagacaaacaaatacactgcaggttatttttgtgtgcgtgtctttttccttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52136 lncRNA downstream 20154 18259127 ~ 18259406 (-) True G41839
TU52135 lncRNA downstream 21245 18258089 ~ 18258315 (-) False AMCG00013051
TU52104 lncRNA downstream 37025 18240468 ~ 18242535 (-) True G41813
TU52098 lncRNA downstream 39191 18239965 ~ 18240369 (-) True G41811
TU52053 lncRNA downstream 222848 17971380 ~ 18056712 (-) False G41772
TU52149 lncRNA upstream 998 18283628 ~ 18284531 (-) True G41849
TU52150 lncRNA upstream 2921 18285551 ~ 18285996 (-) True G41850
TU52151 lncRNA upstream 13015 18295645 ~ 18295946 (-) True G41851
TU52161 lncRNA upstream 49180 18331810 ~ 18386206 (-) False G41858
TU52158 lncRNA upstream 50211 18332841 ~ 18386206 (-) False G41858
AMCG00013050 mRNA downstream 14062 18265139 ~ 18265498 (-) True AMCG00013050
AMCG00013051 mRNA downstream 14717 18258128 ~ 18264843 (-) True AMCG00013051
AMCG00013048 mRNA downstream 24211 18244195 ~ 18255349 (-) True AMCG00013048
AMCG00013049 mRNA downstream 40405 18194012 ~ 18239155 (-) True AMCG00013049
AMCG00013044 mRNA downstream 130382 18139575 ~ 18149178 (-) True AMCG00013044
AMCG00013055 mRNA upstream 9540 18292170 ~ 18293312 (-) True AMCG00013055
AMCG00013063 mRNA upstream 276318 18558948 ~ 18564943 (-) True AMCG00013063
AMCG00013065 mRNA upstream 489995 18772625 ~ 18788291 (-) True AMCG00013065
AMCG00013066 mRNA upstream 522382 18805012 ~ 18820165 (-) True AMCG00013066
AMCG00013067 mRNA upstream 635934 18918564 ~ 18926388 (-) True AMCG00013067
TU52133 other downstream 35467 18242750 ~ 18244093 (-) True G41836
TU52091 other downstream 88038 18176061 ~ 18191522 (-) True G41807
TU52041 other downstream 235973 17954063 ~ 18043587 (-) False AMCG00013042
TU52042 other downstream 380134 17880225 ~ 17899426 (-) False AMCG00013038
TU50830 other downstream 5164073 13114893 ~ 13115487 (-) True G40778
TU52315 other upstream 694430 18977060 ~ 18998766 (-) True AMCG00013071
TU52316 other upstream 694430 18977060 ~ 19022778 (-) False AMCG00013071
TU52331 other upstream 785615 19068245 ~ 19071418 (-) True AMCG00013070
TU52412 other upstream 1697706 19980336 ~ 19982880 (-) True G42076
TU52536 other upstream 2248564 20531194 ~ 20545811 (-) True AMCG00013090

Expression Profile