RNA id: TU52158


Basic Information

Item Value
RNA id TU52158
length 371
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G41858
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18331810 ~ 18386206 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGCCGGACCGGCCGTGTTGTTGGTGGTGACgctgaaaaatatttgtgttgctGCTGCGAGACAGGACGGAGTGGCAGGGAGGGTCAGCTCCAAACGGCTCTGTTTACGCGACTGTTTTCGCTGCATTCGGGCAGGATTATCGCGGCTTTGTTTTGCTCCTCGAAATACAGTTGTGATGTCGATGAATATGGACGAGCTGAGGCACCAAGTGATGATTAACCAGTTTGTTTTGACGGCTGGTTGCGCGGCGGACCAGGCAAAACAGCTCCTTCAAGCGGCTCACTGGCAatttgagaCGGCACTAAGCTCCTTCTTCCAAGAAGCGAATGTTCCAAGCCATCACCATCAGATGCAGGTGGTTGGCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52151 lncRNA downstream 36895 18295645 ~ 18295946 (-) True G41851
TU52150 lncRNA downstream 46845 18285551 ~ 18285996 (-) True G41850
TU52149 lncRNA downstream 48310 18283628 ~ 18284531 (-) True G41849
TU52148 lncRNA downstream 50211 18279560 ~ 18282630 (-) True G41848
TU52136 lncRNA downstream 73435 18259127 ~ 18259406 (-) True G41839
TU52190 lncRNA upstream 42848 18429054 ~ 18433717 (-) True G41875
TU52242 lncRNA upstream 274048 18660254 ~ 18660522 (-) True G41922
TU52245 lncRNA upstream 310614 18696820 ~ 18697607 (-) True G41925
TU52391 lncRNA upstream 1298230 19684436 ~ 19684658 (-) True G42056
TU52393 lncRNA upstream 1390318 19776524 ~ 19776729 (-) True G42058
AMCG00013055 mRNA downstream 39529 18292170 ~ 18293312 (-) True AMCG00013055
AMCG00013050 mRNA downstream 67343 18265139 ~ 18265498 (-) True AMCG00013050
AMCG00013051 mRNA downstream 67998 18258128 ~ 18264843 (-) True AMCG00013051
AMCG00013048 mRNA downstream 77492 18244195 ~ 18255349 (-) True AMCG00013048
AMCG00013049 mRNA downstream 93686 18194012 ~ 18239155 (-) True AMCG00013049
AMCG00013063 mRNA upstream 172742 18558948 ~ 18564943 (-) True AMCG00013063
AMCG00013065 mRNA upstream 386419 18772625 ~ 18788291 (-) True AMCG00013065
AMCG00013066 mRNA upstream 418806 18805012 ~ 18820165 (-) True AMCG00013066
AMCG00013067 mRNA upstream 532358 18918564 ~ 18926388 (-) True AMCG00013067
AMCG00013072 mRNA upstream 577653 18963859 ~ 18964335 (-) True AMCG00013072
TU52133 other downstream 88748 18242750 ~ 18244093 (-) True G41836
TU52091 other downstream 141319 18176061 ~ 18191522 (-) True G41807
TU52041 other downstream 289254 17954063 ~ 18043587 (-) False AMCG00013042
TU52042 other downstream 433415 17880225 ~ 17899426 (-) False AMCG00013038
TU50830 other downstream 5217354 13114893 ~ 13115487 (-) True G40778
TU52315 other upstream 590854 18977060 ~ 18998766 (-) True AMCG00013071
TU52316 other upstream 590854 18977060 ~ 19022778 (-) False AMCG00013071
TU52331 other upstream 682039 19068245 ~ 19071418 (-) True AMCG00013070
TU52412 other upstream 1594130 19980336 ~ 19982880 (-) True G42076
TU52536 other upstream 2144988 20531194 ~ 20545811 (-) True AMCG00013090

Expression Profile