RNA id: TU52190


Basic Information

Item Value
RNA id TU52190
length 4642
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G41875
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18429054 ~ 18433717 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGgaatttttaaaaagttgtttattgttgtttgtttgtttttgttttttaaaaaacagaactcCGTTAAAGTCCTCGTTACAGAGGTTTAACCCTTTCCTTACATCCACAGAtgttcattttgttcatttttgtttgccCATTTTTATGTATGCTGTCTTTAGCTTTGGAGTTATGCAGAACAAGGGGTTACAAAGGAGTCCTACCGGTAAAGAAAGGGTTAAATAAATCCGTAGTGCAAATGTACACAAGAAAAGTCCGAAGTGGAGGTATTGACATGTCTGAACTTCGCTACTCTAAGGTGCTCGCTACAAGAGACTTTCAAACATGCACCCTTTTGTTTCGTGGTCCAGCAGGTCCTGCTTCTAAACAGTGCATTCATTATCCCTTTTtaggttttcattattttacatatttcccAATATAACAGCTTAAACAGATAACACGTACATGTAACACCAAATACCCACagttatgcaaaaaaaaaaaaaaaaaaaaaatcctagtattttattatgaatatggaTTATTTTCCATGGGTAGTTACAGAGAAAGGAAGGACATTTGACATGGAGCGGCACGGAAAGATTGTGCCACTGATTTGTGGTTACAGGACTGAGCTGAAGGGAAATGAATTTGAGTGGGGAttcccaaaccagtcctggaaAAAACCCTGCCCTGTCAGTTTTTATTCCAACCGAGCTTAAataattgagccttatattgcattgttagttcaattaaggattcaattaagcaataaagacctcaattggaacaaaaaaaaaaaaaaaaacacaggaaagcGGGTCCACCAGGACCGTTTTGGGAATCCCTTGATTATAGTAGAGGTAACCGTTGCTAACCTGTTTTATGGTATTTAAGCAGGTAGAAGTACCAGGGGTTTGGAATGAGGTCCATGTGTGGAGTGGATTGTTTGTGgtccccaaaacaaaacagttaaacaCTGCTCACATAAGGCTGAGGATTCGATATTTTAGTAATACTTTAGTAACACTTTCAACAAAATAAGTCACTTTGTATCACCCTGTACAATGAACAGTGCACACTCATGTGAGAGGCAAATTCCCCAGGTCGCGAAATAACCCCAATGCACACCAAAAACATTTACGATTTCCAAGAAGTTCTGGGGTTCAAATTCCACTTGGACAAGTGTTTTTGAGATGTGTGTTGAATGAAGCATCCGAATGATGACAGAaacaatttacatattcattaagaaatatagaaagaaaatgttaattggAATTTAACTGTGATTTTGTCAATTAATTTGCCTGTCCTAAACATGATTCATACTGAGCTCTGCTTGAAATAAGGTATCTGCATTCCTTTGTGTTGTACAGAGGCATTTAAAGGGTTTAACATTTTGTCTGGCATATCGACATTATTTTTGCTCTTGCCCAAAGCATTTTGCCAGGTGCATTTTGGGTTTAACAAACCACCCCACCACCCTCAGCACACTGCATATGAGCTGCACTTCTGCAAAAAAGCAGTTTGAAGATTTCACCTTTTGCAGAAACAGTATATAAAGCTCAGATTATGCCAATAAGAAATGGGTACATATCTTGTCCAGTGCATTAGATTCACTACAACCAACCCAAGTAACTCCCATTTCATTTAACTGATCAGTAATAATTATTGCTACTTGTGGTGGATTGACTGTCAGATAACACTCCCTGTTCACACAAGCGCCAAATTTGAATAAACAAGAGCCTACTTGATTTTCCGTTGCTTGGTCCCTGCAACTTATATAAATtgattattatacaatattatcTCTGAATATGCCCCCTATTTCACTACCTGTGAAAATGCAACAGGATCACTGCAGGACTTCAAAATGCCGCTGTACAGCCAAACAAGCAAGTAGAAAGACATACACAATGCAGGAGAATTTGAAAATAGTAACAGGTTTTCCATCAGAAAACTGGAATTCTCGTTTTAAGTAGCTCCATACTAGCATAGTCTGCATCAAACTTAATTGCCTTACACAAAgacctaaaaaaaacaaaaacaaaaaaacactcactacaaaaatgtgaaattattaacCAAATGCAAGTGAGTGAGAATGCAGATTTGGATAATGTGCTTGTATGTCAGAGTGGGTTTAGTTATTTGTTGAGGATATATATGGTTTTCCTGTTAAAATCATTCCAGTGTCACTAGATGACATGCATCATTTTATTGTGATTGACAGAGATATGAGAAATAAGGTTGTttcttttatatacatatatagatagatatatacatgGCATGCAGGGCTGTATAGTTGCAGCTCATTAGGAGGGGAAGTCTGTGGGTTTTAATGGGGCAGATACAACCCTCCAGACAGGTCAGCACAGACAAAATTGAATGGTGGAGAGACAGACATTTTATTGCTTTAGTGTTTTCCTTTGTGAAGCGCTTTTGGAATCTCACCAGCAACGGCCTGGTATAAAAAAAAGTGGACACCCAAAGAGCACAAGGAAGCCCTCAATCACTTGGACAGAACGCAAAAACTGTGAGGTGTCGAGGAGGAATTGACCATTGCAAAGTTAAAGTGAGCCCAGTTCAAGTAAAGACattgtagtttgtgtgtgtgtatgtgtgtgtgttatttatcttaaataaatgacaaccTTTTAAGTTCTCTAGGCAACATACATTCTCATCCTTGTTTTAAAGACTTAAGTTACATTCCAGGGCTTCGGACAaattatgcttttgtttattatggAATGTTTTTCGGTGTATGCCTTACACAACCTCATTGCTTCTGAAGAGGGCCTGTTTGAAACTACAAGGGGTTTACATAATCAGAATGCCATCACTGTTGCTTGTCAGTTCCATCTCAACAAAGAGTGGAAGTGTGGACTACaagcaaaaatattttcaaaatgtgtcactAGCATGGGGGCTAGATGAgtttcttcctttcatttattCAACTATTATTTCATTGACATTAATTAGCTAACAGTAAATAGCCTCACAAagtaacaatttacaaaagCAGCATCCTTATCGAGCTCATCTTCCTTCATTTACAACTGATGGACTTTTTAAGAAACTGAAGAATGTACATGTTATAGTGTTAAATCAACTGTATTACTCcaaatgaatgagaaattaaactaCATATGCTAAGCTATaacaaagatacatttaaattaaaaaagcaatgcagCAAAATTGGCCCATTGGAAACAAATTGGCCTGAGTGTAACGAAACAGAAATCTCCCTGGTAAACTCAAAATCAAGTACTAGTACAACTAAGTGCATTCACAATTCAAGAAAATCAAGAGAGTCTACAGACTAGCAcaagagcaaacaaacaaataaaaataaagatctcATGGTTTTGCTCCAGAAAGTGGGCAGGGATCTTTTGAGAATGCACTGCTTCTGCTGACCTTGGCAGGAATGGGTAGGCTGCTTCTCTGAGACGCACACCTTGCCAGGCCAAGCTGGTCCTCACAGTGTATATGTTAAAGTGAGCCCTACATCCCTTAAAACCACTTCCCCGTGTTCTGGAGACCTTGAAAAAACTACCAAGCACTACCAAGAAAATCAGCTGCAAGAAGCCTTGTATGTTGTCACAGCAGTGCACCTTACTGCTTTTATCCCAGAGTCTGTAGGGATTTCTAAAACCAAATGCCATATAAccctttaaattattattttttaaattgttttccatttatttggACCCCAGGCTAGTGACACTGCAAATGCTCAACCATGTATCTTTCTACTTGCAAATTAAccaatttattttgtgcatcatGCACAGAAACCCTACATACCTAAGTTGTGACTCAGAACTCCCACAGCACACCTAGGGAACTCAATGCTGCTGCTGTCCAGTGTTGGAATTCCATCAAGGTAATTCATTCACCCAAAATACAAAGTCTACAAGGAAGATTGAAACCTAATGGGTTGACTGAggaaacggaaaaaaaaaatgtagtagtGTAGCATTCTGTAGTCTCTTCCCATGTGGCTTAGCTGTAATACATTCACTGCTTTCATCAAGGCTGTGGGCAGCATGCTTGGCTTCAGGGAGAGTCTCACGATGAAAGATTGGCCTGCGCGGGCAAAGTTTTTAGGAAAGTTCAGCTGTGGATTTGGTGAAGATCCCCCCCATACAAAAAAGATAAGGAAGGGAAAGTCACCTTTTCACCGAAAGCTGGGTGGGGGGAGTTGAGGCAGGTGGTTAGGGGTTTCAAATCACTTTAGTCAGGCAAGGTGCATCACTTAGACCTGCAGGTCTTAGACCTGCTTATTTTGGGGAGACTTGGCAAACTTGCCCCCGAGAGCTACTGTCCATTAGGAAACAAGGGAGATGGTTGCAGCTGTAGTTGTCCTCCAGAAACTTGGAATTGTGGGAGGCAGGGGTCTTGTAAGTGATGCCAAGGTTCGGGGGTGGACCCCAGTGAGATTTGGGGCATCGAGAAAGTAGGGTGTACGTGAGTGGGGGGTATTAGTTGTTAAACAGCAAGAGGTCCACAGTGTCGTGGTTGGGGGGAGACaccctcttcctccccctcctcctccagggcaATGTTGCTAGTGGAGGCGTGGTGTTGTAGGAGCCCTCGCCCCAGCCTGTGGCCCCCTCTGAATACCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52161 lncRNA downstream 42848 18331810 ~ 18386206 (-) False G41858
TU52158 lncRNA downstream 42848 18332841 ~ 18386206 (-) False G41858
TU52160 lncRNA downstream 42848 18378653 ~ 18386206 (-) True G41858
TU52151 lncRNA downstream 133108 18295645 ~ 18295946 (-) True G41851
TU52150 lncRNA downstream 143058 18285551 ~ 18285996 (-) True G41850
TU52242 lncRNA upstream 226537 18660254 ~ 18660522 (-) True G41922
TU52245 lncRNA upstream 263103 18696820 ~ 18697607 (-) True G41925
TU52391 lncRNA upstream 1250719 19684436 ~ 19684658 (-) True G42056
TU52393 lncRNA upstream 1342807 19776524 ~ 19776729 (-) True G42058
TU52419 lncRNA upstream 1552526 19986243 ~ 19987735 (-) True G42078
AMCG00013055 mRNA downstream 135742 18292170 ~ 18293312 (-) True AMCG00013055
AMCG00013050 mRNA downstream 163556 18265139 ~ 18265498 (-) True AMCG00013050
AMCG00013051 mRNA downstream 164211 18258128 ~ 18264843 (-) True AMCG00013051
AMCG00013048 mRNA downstream 173705 18244195 ~ 18255349 (-) True AMCG00013048
AMCG00013049 mRNA downstream 189899 18194012 ~ 18239155 (-) True AMCG00013049
AMCG00013063 mRNA upstream 125231 18558948 ~ 18564943 (-) True AMCG00013063
AMCG00013065 mRNA upstream 338908 18772625 ~ 18788291 (-) True AMCG00013065
AMCG00013066 mRNA upstream 371295 18805012 ~ 18820165 (-) True AMCG00013066
AMCG00013067 mRNA upstream 484847 18918564 ~ 18926388 (-) True AMCG00013067
AMCG00013072 mRNA upstream 530142 18963859 ~ 18964335 (-) True AMCG00013072
TU52133 other downstream 184961 18242750 ~ 18244093 (-) True G41836
TU52091 other downstream 237532 18176061 ~ 18191522 (-) True G41807
TU52041 other downstream 385467 17954063 ~ 18043587 (-) False AMCG00013042
TU52042 other downstream 529628 17880225 ~ 17899426 (-) False AMCG00013038
TU50830 other downstream 5313567 13114893 ~ 13115487 (-) True G40778
TU52315 other upstream 543343 18977060 ~ 18998766 (-) True AMCG00013071
TU52316 other upstream 543343 18977060 ~ 19022778 (-) False AMCG00013071
TU52331 other upstream 634528 19068245 ~ 19071418 (-) True AMCG00013070
TU52412 other upstream 1546619 19980336 ~ 19982880 (-) True G42076
TU52536 other upstream 2097477 20531194 ~ 20545811 (-) True AMCG00013090

Expression Profile