RNA id: TU52389


Basic Information

Item Value
RNA id TU52389
length 266
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G42054
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19586528 ~ 19586793 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctccatgatgcgaaccctggaaaggaccttgatcttctcTTGCTCCTCCCGATAGAGGGCGGAGAGACTCAGTTTGACCCGGGCCACCTCCTCAGCTaggtcgaagcctctgagctgtaaaagaCTCAGGCGCTGGAGGCGGGCATTTAGATGAGAATATCTCGCCTGCCTCTTGCGAGCTTTCCGTTTCcccagctgaatgaagtagcccttggtccttttcttcaccatctcccaccactctatgggagaatcaaaaaggtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52321 lncRNA upstream 518318 19066973 ~ 19068210 (+) True G41990
TU52293 lncRNA upstream 612166 18969911 ~ 18974362 (+) True AMCG00013068
TU52295 lncRNA upstream 612166 18969911 ~ 18974362 (+) False AMCG00013068
TU52294 lncRNA upstream 613507 18969911 ~ 18973021 (+) False AMCG00013068
TU52244 lncRNA upstream 888896 18696820 ~ 18697632 (+) True G41924
TU52418 lncRNA downstream 399385 19986178 ~ 19987860 (+) True G42077
TU52478 lncRNA downstream 800891 20387684 ~ 20392609 (+) True G42127
TU52537 lncRNA downstream 964467 20551260 ~ 20551817 (+) True G42172
TU52549 lncRNA downstream 1040301 20627094 ~ 20627334 (+) True G42177
TU52658 lncRNA downstream 1252796 20839589 ~ 20840560 (+) True G42269
AMCG00013074 mRNA upstream 508827 19072236 ~ 19077701 (+) True AMCG00013074
AMCG00013073 mRNA upstream 521989 19048484 ~ 19064539 (+) True AMCG00013073
AMCG00013068 mRNA upstream 615460 18967429 ~ 18971068 (+) False AMCG00013068
AMCG00013064 mRNA upstream 893777 18691996 ~ 18692751 (+) True AMCG00013064
AMCG00013058 mRNA upstream 1027247 18553253 ~ 18559281 (+) True AMCG00013058
AMCG00013076 mRNA downstream 393747 19980540 ~ 19982853 (+) True AMCG00013076
AMCG00013081 mRNA downstream 420824 20007617 ~ 20007958 (+) True AMCG00013081
AMCG00013079 mRNA downstream 447424 20034217 ~ 20080006 (+) True AMCG00013079
AMCG00013082 mRNA downstream 670867 20257660 ~ 20258634 (+) True AMCG00013082
AMCG00013088 mRNA downstream 811816 20398609 ~ 20403101 (+) True AMCG00013088
TU52302 other upstream 557250 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 3955901 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 4107162 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 4449799 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 4953115 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 1682882 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 1784050 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 1839867 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 1898114 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 1898528 21485321 ~ 21486808 (+) False G42344

Expression Profile