RNA id: TU52393


Basic Information

Item Value
RNA id TU52393
length 206
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G42058
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19776524 ~ 19776729 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

accctttatacgcctgtcagatcaatagatgattggttcttgagtttgtgagattggatttcggtttcagcccccagtgtcctattggaggggggcttgatttatgactgatgtcaatccatgccatcttttggaaatgccggttggcccgggttcgtagctctgtgtcgtgatttcggctctcgtccatttcaaagagtttttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52391 lncRNA downstream 91866 19684436 ~ 19684658 (-) True G42056
TU52245 lncRNA downstream 1078917 18696820 ~ 18697607 (-) True G41925
TU52242 lncRNA downstream 1116002 18660254 ~ 18660522 (-) True G41922
TU52190 lncRNA downstream 1342807 18429054 ~ 18433717 (-) True G41875
TU52158 lncRNA downstream 1390318 18332841 ~ 18386206 (-) False G41858
TU52419 lncRNA upstream 209514 19986243 ~ 19987735 (-) True G42078
TU52493 lncRNA upstream 624979 20401708 ~ 20405085 (-) True G42136
TU52621 lncRNA upstream 889616 20666345 ~ 20674228 (-) True G42242
TU52672 lncRNA upstream 1112954 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA upstream 1112954 20889683 ~ 20890288 (-) False G42278
AMCG00013078 mRNA downstream 386403 19211843 ~ 19390121 (-) True AMCG00013078
AMCG00013075 mRNA downstream 567520 19080736 ~ 19209004 (-) True AMCG00013075
AMCG00013070 mRNA downstream 705152 19069196 ~ 19071372 (-) False AMCG00013070
AMCG00013069 mRNA downstream 730478 19025572 ~ 19046046 (-) True AMCG00013069
AMCG00013071 mRNA downstream 771264 18978443 ~ 19005260 (-) False AMCG00013071
AMCG00013077 mRNA upstream 186801 19963530 ~ 19978155 (-) True AMCG00013077
AMCG00013080 mRNA upstream 212132 19988861 ~ 20005821 (-) True AMCG00013080
AMCG00013083 mRNA upstream 592417 20369146 ~ 20372204 (-) True AMCG00013083
AMCG00013085 mRNA upstream 616925 20393654 ~ 20397861 (-) True AMCG00013085
AMCG00013084 mRNA upstream 629828 20406557 ~ 20445394 (-) True AMCG00013084
TU52331 other downstream 705106 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 753746 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 777758 18977060 ~ 18998766 (-) True AMCG00013071
TU52133 other downstream 1532431 18242750 ~ 18244093 (-) True G41836
TU52091 other downstream 1585002 18176061 ~ 18191522 (-) True G41807
TU52412 other upstream 203607 19980336 ~ 19982880 (-) True G42076
TU52536 other upstream 754465 20531194 ~ 20545811 (-) True AMCG00013090
TU52810 other upstream 1475378 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 1529457 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 1559488 21336217 ~ 21517177 (-) True G42371

Expression Profile