RNA id: TU52412


Basic Information

Item Value
RNA id TU52412
length 2213
RNA type TUCP
GC content 0.45
exon number 2
gene id G42076
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19980336 ~ 19982880 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCATTAAATCAATGCTTACATTGTAAGTCAACATGTTTAAACATCCAACtgtgtaaaaatgtaacttAAGATTAGTCTTGAATGAGTAACAATGGAACTCAGACTgggttttatcattttattaagtGCTTTGCATTCAGAAGACTGACAGTACAAACTTTGCTCCCAGGTCTACATCCACTGGAATGAAAGGACACAGAAGGAAAGAGGACAGGCAGGGAGGGTGAGGAAACCGCTAAACTAGAGATTTATTCGTAGATCCAGTCGTGAGCAGGGCTCTTGTAGGAAACCAACTCCTCGGGTTTGAACCACAGGCTGATCTCGGTGTTGGCGCTTTCCACAGAGTCACTGCCGTGAATGATGTTTTCCAACCTGAATGCAGAAATCACCGCGGATGGTGCCAGGCTTTGAAGCAGCGGGGTCAGTCTCGCCCAGCATTACTCTGCCAGTCTTCACTACTTTAAGGCCTTCCCACACCTAAAATTAAAAGGAGAATTTAGCTtggtttaaattttaaaaagacaaaaggccCATCAAGAGTTATTTTGACTTGGTCATATTTACCATGGCAACAACAGGTCCAGAGTTCATGTACTTGACCAGTCCAGCGTAGAATGGTCTGTCCTTCAGGTCAATGTAGTGCTGTTTCAAGAGATCTTCAGATGCCTGTACACAAGAATTGAATTCAATTAatcccattaaaaataaaaaataatttgaggtGCAGTTTCACTCAATTGGAAGCATTTCTTCAGACACGTCTACTATATGCTTTGAGATTCTCATCAGGATTGATTGGTAAAAATAAAGACCAGTTGAAGTCATTTGGATTGCACATTTAAAGAGTGGCGTGGCATTTAACACACAGGCCTCAAGGAAGTACCCACAATacactggtttaaaaataaatccaatctGGGTGTTCCGTTCTATTCCTTGTCGGTCTGACAGCACTATATCAGGAAGTGCAAGCCACTTGTCCAGCAAGGCAATCAACCATAACACTTCTAAACAGGGAGTAGCCAAAAATAGACTACATTTACCAGGCTGGGAACCCTTAATCTCAGTTAAAACCAAACCAGGTTACCCCTATTCTTCCAATAAAAACATCCTTTGGAAAAGCACAATGaacattaaaaactgaactATGGCATTGCTTTACATTATGAAGTATTGCCCGATCTTGTAGATCAAGCCTAGTACTGGTATTGCGGTTTCTAAAACTACAGCCACAATACTCCAGATTAACAGTAACCAAGTTTTAAAAACGTGACCATGGCACAAttgcaaataaacacatgttAAGAGCTATAGTTAAGCACAGTGTGGGATGGAGCATTTCTGGTTGGAGAGATTATAGGGATACAAAAGCAGTTACGAAAATGGCAGATGGATAAATATGGGCCTGTAAGCCTTGTTTAATGGACAAaagtggagggggggggtaGGTAGGTTCATAATATCACATCAGAAGGATTGGCTACTATTTCACTCCAGAGAAGTCAAAGGTTTAGAGAAGCCAGGCAGTCCAGTCAGAAATCAGTTATTTTAAGCCTCTTAAGCCCAAGCACAGATTTATCCAGACATAAGCATGCGGGtggaagaggggagaggggggggcgGCAAAAGCAACAATACATACGTGCAGCATTTTCATTGCCACGAGTTTGAAGCCTTTCTGCTCAAAACGCTTGATGATTTCTCCAACAAGGCCTCTCTGCACGCCGTCGGGCTTGACCGCGATGAAGGTGCGCTCCTCGGCCATGGTGCTGAAACACAAAGACACGGGTATATACCAGCTGGACTTGAATCCGACTGCAAAAACACATGCACCAGGGGCTGAATCCTTACATTTCGAGTTGCCCCGGAGGAACACTTGGAAATCGTGGTCTGAATAACGCCCCCACCCCCATTGCGCAGACGGAGAGTCTCCGAGGCAGCCAGCCGGCCTGCGACTCGTTTGTATCCGGGCAGGGAGACGGGGCCGGCGGGTTATGTAATGCCGGTTACCTTAAGGTAAAAGTCCTCAATCCCTGCTATGCGAGTCCATTGCCGGCTCTGACAGACGGGCACCCGCAAGGCTCAGTCCGCCCCGCTCCCATAGTGGACGGCCGCGCAGAAGCTCATTCAAGCCGGGCAGGTGGTTATTATATTGCTGTAAAGACTGCAGATCTGCCATTACGAATGAAACGCGTCCGGTCCAGGACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52393 lncRNA downstream 203607 19776524 ~ 19776729 (-) True G42058
TU52391 lncRNA downstream 295678 19684436 ~ 19684658 (-) True G42056
TU52245 lncRNA downstream 1282729 18696820 ~ 18697607 (-) True G41925
TU52242 lncRNA downstream 1319814 18660254 ~ 18660522 (-) True G41922
TU52190 lncRNA downstream 1546619 18429054 ~ 18433717 (-) True G41875
TU52419 lncRNA upstream 3363 19986243 ~ 19987735 (-) True G42078
TU52493 lncRNA upstream 418828 20401708 ~ 20405085 (-) True G42136
TU52621 lncRNA upstream 683465 20666345 ~ 20674228 (-) True G42242
TU52672 lncRNA upstream 906803 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA upstream 906803 20889683 ~ 20890288 (-) False G42278
AMCG00013077 mRNA downstream 2181 19963530 ~ 19978155 (-) True AMCG00013077
AMCG00013078 mRNA downstream 590215 19211843 ~ 19390121 (-) True AMCG00013078
AMCG00013075 mRNA downstream 771332 19080736 ~ 19209004 (-) True AMCG00013075
AMCG00013070 mRNA downstream 908964 19069196 ~ 19071372 (-) False AMCG00013070
AMCG00013069 mRNA downstream 934290 19025572 ~ 19046046 (-) True AMCG00013069
AMCG00013080 mRNA upstream 5981 19988861 ~ 20005821 (-) True AMCG00013080
AMCG00013083 mRNA upstream 386266 20369146 ~ 20372204 (-) True AMCG00013083
AMCG00013085 mRNA upstream 410774 20393654 ~ 20397861 (-) True AMCG00013085
AMCG00013084 mRNA upstream 423677 20406557 ~ 20445394 (-) True AMCG00013084
AMCG00013090 mRNA upstream 550703 20533583 ~ 20538805 (-) False AMCG00013090
TU52331 other downstream 908918 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 957558 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 981570 18977060 ~ 18998766 (-) True AMCG00013071
TU52133 other downstream 1736243 18242750 ~ 18244093 (-) True G41836
TU52091 other downstream 1788814 18176061 ~ 18191522 (-) True G41807
TU52536 other upstream 548314 20531194 ~ 20545811 (-) True AMCG00013090
TU52810 other upstream 1269227 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 1323306 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 1353337 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 1354187 21337067 ~ 21375763 (-) True G42381

Expression Profile