RNA id: TU52418


Basic Information

Item Value
RNA id TU52418
length 1683
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G42077
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19986178 ~ 19987860 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtataattattttattcagtgtaaAAAATTTCTTTAgtgaattattttcttcttttacacaaagttataattttaatgctttttcaCATCCATGCTGAAAATGTTTGCAAggtttgtaaaaaacaaaacaaaacaaaccaaacaaaaaaaataacaaaaataagcaaTCAACATATTCTTAAAAGTTTTTTTcaccttatttttttatatacatattcagaGAAAGGCAAAAACCCCTCATTCACTGCACAACttaccattaaaatgaaaggaaagaaaacaacctgTACAGACACAATATATCAAAACTCTTACAGAAAAGGATGTACAAACCCCATATGTCGCTCTTGCCCCATGAATACCACAAgggcaatttattttttaatatttttaaatttattttctacaaaggatttttcttcttttttgtttgtatccAAAATACAAGAGCACGGAAGAGAACTTAAATTTTCCCCCCTATAATCACAGTTTCTGAAAATCATTCCCCAGATATAAATGATTATCAGTATATCAAATATATAGCACCATAATACAAAGACTGAGGAAAAGGGGATTcacatcagaaaaataaaagagaccCGTGTTAGTATTCAAAGAACAGAAGTTGCACATTACTAAAGACTAGCTGCGTAAGCAAAGAGTTCAGTTCAGGTTATTGGGCTCCCTTTTGCAGTTTGGAACTGCATTTGGTTTATTTCAAACCTCtgtacatttagatttttcacAAATTTTTTAAGGTaataaaagtagtttttttttctttagagaagggaaaaaaaagacagacctCAATTGTCAACAGAAAAAGATttgctgaaacaaaaaaaaactacattgaTGCTATGGATTTgtgcattaattattttaagtctgattaaaaaatacaaataaatacaaaataaaaccaaactgcATCAGCAGCCCAGTTAGCAGCTAAGTTTgactttaaaactaaattgtCATACCAAAAATTAAAGTCAACCATTTGGTCTCAAATACTTGATGTCCACCTGAAGGTGACTGAGGTTGTTTATCTTTAATGTTCGCTTCCTCAGCTTTCCATATTGTACCATTTGAATTGTAATGGTTGAAATTCAGTGATAAAATTGTGTAATAGTCCTGATGAGGGTGTGTAagcattgttaaataaattaaactgaagcaaacctttgcttttgtttggtggtttgtttaatttcataataatgCCTGTCAAGATTTCAAGGCATTAACTAAATGCTGATGAATTAATATGTTATGCCGCACAACCAAATGTTTTTGCTGAAAGTGTATTTGGTAGGATGTTATAGACTCATTATTGCTCTGCTGAAAGTGAAATCTATGCCATCTGAAAACCGAACTGTTCTTCACTTATGCAAGCGAATGcattaaatgcatatttccaTTTCAGTTGAATTGTGTGCCCATGTATCCCCTTACAGAATTGAACAtcaaaaaataagttttgaaTTTTGTAAAATAGAAACAGTAGAACCATCGACCAAAGTCAGGGAATGGGTCTGTCACAACATAGCCCCACCCACCCCAATCCACCCTCTCCCAACACAAGATAAGGAACAAACTGCTGGCTTACAAAAACCTATACATCACTCTTCCATTGTGCAgtactatttgtttttttaatatatatatatatatata

Function

GO:

id name namespace
GO:0004055 argininosuccinate synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52389 lncRNA upstream 399385 19586528 ~ 19586793 (+) True G42054
TU52321 lncRNA upstream 917968 19066973 ~ 19068210 (+) True G41990
TU52293 lncRNA upstream 1011816 18969911 ~ 18974362 (+) True AMCG00013068
TU52295 lncRNA upstream 1011816 18969911 ~ 18974362 (+) False AMCG00013068
TU52294 lncRNA upstream 1013157 18969911 ~ 18973021 (+) False AMCG00013068
TU52478 lncRNA downstream 399824 20387684 ~ 20392609 (+) True G42127
TU52537 lncRNA downstream 563400 20551260 ~ 20551817 (+) True G42172
TU52549 lncRNA downstream 639234 20627094 ~ 20627334 (+) True G42177
TU52658 lncRNA downstream 851729 20839589 ~ 20840560 (+) True G42269
TU52670 lncRNA downstream 901815 20889675 ~ 20890332 (+) True G42277
AMCG00013076 mRNA upstream 3325 19980540 ~ 19982853 (+) True AMCG00013076
AMCG00013074 mRNA upstream 908477 19072236 ~ 19077701 (+) True AMCG00013074
AMCG00013073 mRNA upstream 921639 19048484 ~ 19064539 (+) True AMCG00013073
AMCG00013068 mRNA upstream 1015110 18967429 ~ 18971068 (+) False AMCG00013068
AMCG00013064 mRNA upstream 1293427 18691996 ~ 18692751 (+) True AMCG00013064
AMCG00013081 mRNA downstream 19757 20007617 ~ 20007958 (+) True AMCG00013081
AMCG00013079 mRNA downstream 46357 20034217 ~ 20080006 (+) True AMCG00013079
AMCG00013082 mRNA downstream 269800 20257660 ~ 20258634 (+) True AMCG00013082
AMCG00013088 mRNA downstream 410749 20398609 ~ 20403101 (+) True AMCG00013088
AMCG00013087 mRNA downstream 497163 20485023 ~ 20502341 (+) True AMCG00013087
TU52302 other upstream 956900 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 4355551 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 4506812 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 4849449 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 5352765 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 1281815 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 1382983 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 1438800 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 1497047 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 1497461 21485321 ~ 21486808 (+) False G42344

Expression Profile