RNA id: TU52752



Basic Information


Item Value
RNA id TU52752
length 264
lncRNA type read_through
GC content 0.45
exon number 2
gene id G42330
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21256585 ~ 21304213 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTACAGACTGGACTTGCAACAGCAGGTCATTCTTTTCCTGTAGAAGAGACACCATTTTCTCTTCTAGGTCCTTTCTCTTAGCTTCTGCCTTTGCCAGATCTTCCTTGCACTTGGCAAATTCTTCCTTCATGTTGGCAAATTCCTTCTCTGCCTCTGCGCTCCTCAGAAGTGGCTTGATCTTGAAGTACAGCTTCATCCATGGCCAGTGTTTCACATTCATGAATGAGCGGATGTTGTATTGGATGGTGAAAAcggactctctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52670 lncRNA upstream 366253 20889675 ~ 20890332 (+) True G42277
TU52658 lncRNA upstream 416025 20839589 ~ 20840560 (+) True G42269
TU52549 lncRNA upstream 629251 20627094 ~ 20627334 (+) True G42177
TU52537 lncRNA upstream 704768 20551260 ~ 20551817 (+) True G42172
TU52478 lncRNA upstream 863976 20387684 ~ 20392609 (+) True G42127
TU52753 lncRNA downstream 59891 21364104 ~ 21411989 (+) True G42331
TU52774 lncRNA downstream 168503 21472716 ~ 21508824 (+) True G42345
TU52776 lncRNA downstream 194760 21498973 ~ 21503924 (+) True G42347
TU52783 lncRNA downstream 224568 21528781 ~ 21600968 (+) True G42350
TU52917 lncRNA downstream 844081 22148294 ~ 22148513 (+) True G42448
AMCG00013107 mRNA upstream 40507 21185746 ~ 21216078 (+) True AMCG00013107
AMCG00013105 mRNA upstream 180826 21029565 ~ 21075759 (+) True AMCG00013105
AMCG00013104 mRNA upstream 257275 20988853 ~ 20999310 (+) True AMCG00013104
AMCG00013100 mRNA upstream 276343 20960421 ~ 20980242 (+) True AMCG00013100
AMCG00013101 mRNA upstream 425586 20817521 ~ 20830999 (+) True AMCG00013101
AMCG00013122 mRNA downstream 36797 21341010 ~ 21343727 (+) True AMCG00013122
AMCG00013123 mRNA downstream 39651 21343864 ~ 21345063 (+) True AMCG00013123
AMCG00013121 mRNA downstream 46449 21350662 ~ 21359707 (+) True AMCG00013121
AMCG00013128 mRNA downstream 58102 21362315 ~ 21362913 (+) True AMCG00013128
AMCG00013119 mRNA downstream 95193 21399406 ~ 21400312 (+) True AMCG00013119
TU52302 other upstream 2227307 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 5625958 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 5777219 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 6119856 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 6623172 14632357 ~ 14633413 (+) True G41059
TU52756 other downstream 66630 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 122447 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 180694 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 181108 21485321 ~ 21486808 (+) False G42344
TU52922 other downstream 938216 22242429 ~ 22245790 (+) True G42453

Expression Profile