RNA id: TU52772



Basic Information


Item Value
RNA id TU52772
length 620
RNA type TUCP
GC content 0.46
exon number 6
gene id G42344
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21426660 ~ 21486808 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTAAACAGAATTACATGACCAAATGTAGAAGAATACTTTGCTGCTTTGGCAAAACTGATCTTTATAAAATGAGCTCCAGCAAGCCTCCACTCATAGAGAAGATTGTCAAGATTCCAACAAGTGTGACTGACATCATTTAACACTCAAGTTCCTGGGGTTGGTGTCAAGGAAGTGAGCTTTCATCATGAGTACGGACGCGGAGATGGCCGTTTTTGGCCCAGCTGCCATATACCTGAGGAAGCCTGAGAAGGAGAGGATTGAGGCTCAGAACAAACCATTTGATGCCAAATCTGCCGTCTATGTAACTGATGCAAAGGAGCTGTACGTCAAAGGTGTGGTCCAAAGTAGGGAAGGGGGCAAAGCTACTGTCAAGACTGAGGCTGGCCAAACTGTCACAGTCAAGGAGGATGACGTCTTCCCAATGAATCCTCCCAAGTACGACAAAATTGAGGACATGGCGATGATGACCCACCTGAATGAAGCCTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATTTACACCTACTCGGGGCTGTTTTGTGCAACTGTGAACCCCTACAAGTGGCTCCCAGTGTATGATCAANNNNNTGTGAACCCCTACAAGTNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52753 lncRNA upstream 14671 21364104 ~ 21411989 (+) True G42331
TU52752 lncRNA upstream 122447 21256585 ~ 21304213 (+) False G42330
TU52751 lncRNA upstream 167072 21256585 ~ 21259588 (+) True G42330
TU52670 lncRNA upstream 536328 20889675 ~ 20890332 (+) True G42277
TU52658 lncRNA upstream 586100 20839589 ~ 20840560 (+) True G42269
TU52776 lncRNA downstream 12165 21498973 ~ 21503924 (+) True G42347
TU52783 lncRNA downstream 41973 21528781 ~ 21600968 (+) True G42350
TU52917 lncRNA downstream 661486 22148294 ~ 22148513 (+) True G42448
TU52918 lncRNA downstream 662777 22149585 ~ 22149787 (+) True G42449
TU52926 lncRNA downstream 770698 22257506 ~ 22259912 (+) False AMCG00013147
AMCG00013126 mRNA upstream 5344 21416485 ~ 21421316 (+) False AMCG00013126
AMCG00013119 mRNA upstream 26348 21399406 ~ 21400312 (+) True AMCG00013119
AMCG00013128 mRNA upstream 63747 21362315 ~ 21362913 (+) True AMCG00013128
AMCG00013121 mRNA upstream 66953 21350662 ~ 21359707 (+) True AMCG00013121
AMCG00013123 mRNA upstream 81597 21343864 ~ 21345063 (+) True AMCG00013123
AMCG00013127 mRNA downstream 58811 21545619 ~ 21547056 (+) True AMCG00013127
AMCG00013129 mRNA downstream 64364 21551172 ~ 21585017 (+) True AMCG00013129
AMCG00013146 mRNA downstream 286434 21773242 ~ 21911741 (+) True AMCG00013146
AMCG00013148 mRNA downstream 443247 21930055 ~ 22228496 (+) True AMCG00013148
AMCG00013147 mRNA downstream 761689 22248497 ~ 22260816 (+) True AMCG00013147
TU52756 other upstream 7873 21370843 ~ 21418787 (+) True AMCG00013126
TU52747 other upstream 147932 21269675 ~ 21278728 (+) True G42326
TU52302 other upstream 2397382 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 5796033 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 5947294 15477179 ~ 15479366 (+) True G41264
TU52922 other downstream 755621 22242429 ~ 22245790 (+) True G42453
TU53407 other downstream 3260684 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 3281616 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 4033359 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 4768171 26254979 ~ 26257842 (+) False AMCG00013255

Expression Profile